View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_high_20 (Length: 313)
Name: NF19507_high_20
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 26309737 - 26309880
Alignment:
| Q |
1 |
ttattcaattggcatcatagcttaaattatgaaactcatattgcaaagtcatgttacttcaataacaagnnnnnnntaagatagagttcatcttacaatg |
100 |
Q |
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| T |
26309737 |
ttattcaattggtatcatagcttaaattatgaaactcatattgcaaagtcatgttccttcaataacaagaaaaaaataagatagagttcatcttacaatg |
26309836 |
T |
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| Q |
101 |
aaacaccatattatacttatgcaaaaatatagctatactatata |
144 |
Q |
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| T |
26309837 |
aaacaccatattatacttatgcaaaaatatagctatactatata |
26309880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 26309859 - 26309967
Alignment:
| Q |
188 |
aaaaatatagctatactatatacgctatcatgatttgcaattgcattaccggtgaatcagaggagactgaaacagccacattctccg-------cgacga |
280 |
Q |
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| T |
26309859 |
aaaaatatagctatactatatacgctatcatgat------ttgcattaccggtgaatcagaggaggctgaaacaacgacattctccgccgtccacgacga |
26309952 |
T |
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| Q |
281 |
cataatccaagctca |
295 |
Q |
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| T |
26309953 |
cataatccaagctca |
26309967 |
T |
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