View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_high_41 (Length: 227)
Name: NF19507_high_41
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_high_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 52956075 - 52955849
Alignment:
| Q |
1 |
ttagcacatcttggttcctactaaattatataagatctaacttggtcaaataacctcttatgtacaaaatttgcatgaacaaattctatcaagtctctga |
100 |
Q |
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| T |
52956075 |
ttagcacatcttggttcctactaaattatataagatctaacttggtcaaataacctcttatgtataaaatttgcatgaacagattctatcaagtctctga |
52955976 |
T |
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| Q |
101 |
tggtcattannnnnnnnnnnnncaaaacaacatatattataatagccgactgcaaagcacgacataaatggccagaaacgggactacaaatgcagcctag |
200 |
Q |
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| T |
52955975 |
tggtcattctttttttctttttgaaaacaacatatattataacagccgactgcaaagcacgacataaatggccagaaacaggactacaaatgcagcctag |
52955876 |
T |
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| Q |
201 |
tgcatacacaaaggcggtcgacagagc |
227 |
Q |
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||||| |||||||| |||||||||||| |
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| T |
52955875 |
tgcattcacaaaggtggtcgacagagc |
52955849 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3627322 - 3627245
Alignment:
| Q |
1 |
ttagcacatcttggttcctactaaattatataagatctaacttggtcaaataacctcttatgtacaaaatttgcatgaa |
79 |
Q |
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|||||||| ||||||||| | ||||||||||| | |||||| ||||||||||| | |||||||||||||| |||||| |
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| T |
3627322 |
ttagcacagtttggttccttcaaaattatataaaaaataacttagtcaaataacc-cctatgtacaaaattttcatgaa |
3627245 |
T |
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