View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_high_9 (Length: 463)
Name: NF19507_high_9
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 448
Target Start/End: Complemental strand, 18486979 - 18486557
Alignment:
| Q |
6 |
agcagcacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaacc |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18486979 |
agcatcacaaacaatgagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaacc |
18486880 |
T |
|
| Q |
106 |
attcttttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaa |
205 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486879 |
attcttttaatccaaccatctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaa |
18486780 |
T |
|
| Q |
206 |
tcacattctatcatgttatggaaacattaatagacaattaaatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaa |
305 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| ||||||||| |
|
|
| T |
18486779 |
tcacattctgttatgttatggaaacattaatagacaattaaatacatattattttgaa--------------------aatgtgacaaatattgataaaa |
18486700 |
T |
|
| Q |
306 |
ttttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttg |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486699 |
tattcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttg |
18486600 |
T |
|
| Q |
406 |
aactgtgagagcaactaaagctgctagcaccaagcttgaggtt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486599 |
aactgtgagagcaactaaagctgctagcaccaagcttgaggtt |
18486557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 447
Target Start/End: Complemental strand, 18513328 - 18512907
Alignment:
| Q |
6 |
agcagcacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaacc |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513328 |
agcatcacacacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaacc |
18513229 |
T |
|
| Q |
106 |
attcttttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaa |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513228 |
attcttttaatccaaccatctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaa |
18513129 |
T |
|
| Q |
206 |
tcacattctatcatgttatggaaacattaatagacaattaaatacatatgatattgaacaatatagctatagttaaattatgtaacaaatgttgataaaa |
305 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| |||||||||||||| || ||||| |||| ||||| ||||||||| |
|
|
| T |
18513128 |
tcacattctgttatgttatggaaacattaatagataattaaatacatattattttgaa--------------------aatgtggcaaatattgataaaa |
18513049 |
T |
|
| Q |
306 |
ttttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttg |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18513048 |
tattcacctgtaattggttgtttttggttgaagaaggtgaagatgcagaagaaggaatttctagtataactggatctatcggtgagaagtagaagacttg |
18512949 |
T |
|
| Q |
406 |
aactgtgagagcaactaaagctgctagcaccaagcttgaggt |
447 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18512948 |
aactgtgagagcaactaaagatgctagcaccaagcttgaggt |
18512907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 18506825 - 18506620
Alignment:
| Q |
11 |
cacagacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattct |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18506825 |
cacaaacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattct |
18506726 |
T |
|
| Q |
111 |
tttaatccaaccatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18506725 |
tttaatccaaccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
|
| Q |
211 |
ttctat |
216 |
Q |
| |
|
||||| |
|
|
| T |
18506625 |
ctctat |
18506620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 373 - 448
Target Start/End: Complemental strand, 18506457 - 18506382
Alignment:
| Q |
373 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtt |
448 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagtaccaagcttgaggtt |
18506382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 18506515 - 18506482
Alignment:
| Q |
306 |
ttttcacctgtaattggttgtttttggttgaaga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18506515 |
ttttcacctgtaattggttgtttttggttgaaga |
18506482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University