View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_1 (Length: 1013)
Name: NF19507_low_1
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_1 |
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| [»] scaffold0440 (2 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 305 - 998
Target Start/End: Original strand, 11354 - 12048
Alignment:
| Q |
305 |
aaaacatcttttcttcaaaattttgcacccagaatcacaaaacaaaccaatccacccgaaatcaccaaataacaaaagcaaatttcttataatatacgtt |
404 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11354 |
aaaacatcttttcttcaaaattttgcacccataatcacaaaacaaaccaatccacccgaaatcaccaaataacaaaagcaaatttcttataatatacgtt |
11453 |
T |
|
| Q |
405 |
tgcattgaacccttttatataggtcctaacccatagttcaggtcattaatgcagcagaaagaaaatatgtaagcagaataatcggaggtaactacccgta |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11454 |
tgcattgaacccttttatataggtcctaacccatagttcaggtcattaatgcagcagaaagaaaatatgtaagcagaataatcggaggtaactacccgta |
11553 |
T |
|
| Q |
505 |
ttcaacccgtgcaaatcaattagcttattcttctcaatttatgtcgcatatatggttagagtttttatcatatgcttacctctcgttgaaactgtgagct |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11554 |
ttcaacccgtgcaaatcaattagcttattcttctcaatttatgtcgcatatatggttagagtttttatcatatgcttacctctcgttgaaactgtgagct |
11653 |
T |
|
| Q |
605 |
tccttgttgtgcatcaggatgaagaactttaactgcaacaggagtatggtctagaagacatctataaacaggaacataaccaccttctccaatcctaagt |
704 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11654 |
tccttgttgtgcatcaggatgaagaactttaactgcaacgggagtatggtctggaagacatctataaacaggaccataaccaccttctccaatcctaagt |
11753 |
T |
|
| Q |
705 |
gactcagcnnnnnnnctcgtcgcagcttcaatctcctcaattgcataccttctatatgaggaagatttcaagttaaataaagcacacctatacagaaaat |
804 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11754 |
gactcagcaaaaaaactcgtcgcagcttcaatctcctcaattgcataccttctatatgaggaagatttcaagttaaataaagcacacctatacagcaaat |
11853 |
T |
|
| Q |
805 |
ttattcagcatttactcaaacaaacaatacaaatctttcaatgaactgaaatttgatacaaaatatgtaagcagaatactctcataaccctttc-ttttt |
903 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
11854 |
ttattcagcatttactcaaacaaacaatacaaatctttcaatgaactgaaatttgatacaaaatatgtaagcagaatactctcatagccctttctttttt |
11953 |
T |
|
| Q |
904 |
tgtgttaataccttcattttcaactgttggtagcttgactttttgcacatttcttcactcatctaccctattcatagtccaagtaataaagatat |
998 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11954 |
tgtgttaataccttcattttcaactgttggtagcttgactttttgcacatttcttcactcatctaccctattcatagtccaagtaataaagatat |
12048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 11061 - 11262
Alignment:
| Q |
12 |
agcaaaggcagcaggagtataagttgattcacgctcagaagcaagttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagca |
111 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11061 |
agcagaggcagcaggagtataagttgattcgcgctcagaagcaagttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagca |
11160 |
T |
|
| Q |
112 |
tcttcaattttcttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattgga |
211 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11161 |
tcttcaattttcttatttgcctacttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattgga |
11260 |
T |
|
| Q |
212 |
ct |
213 |
Q |
| |
|
|| |
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|
| T |
11261 |
ct |
11262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 32640659 - 32640462
Alignment:
| Q |
18 |
ggcagcaggagtataagttgattcacgctcagaagcaag---ttgaactttctgaaattccttcaatgtggtttggaaatctcttgccaacttagcatct |
114 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
32640659 |
ggcagcaggagtataagctgattcacgctcagaagcaagctgttgaactttctgaaattcttgcaatgtggtttggaaatctcttgccaacttagcatct |
32640560 |
T |
|
| Q |
115 |
tcaattttcttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaacaaattggac |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
32640559 |
tcaattttcttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaacaaaacagcaagttggac |
32640462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 546 - 760
Target Start/End: Complemental strand, 1273442 - 1273226
Alignment:
| Q |
546 |
tgtcgcatatatggttagag--tttttatcatatgcttacctctcgttgaaactgtgagcttccttgttgtgcatcaggatgaagaactttaactgcaac |
643 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||| || |
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| T |
1273442 |
tgtcgcatatatggttagagagtttttatcatatgcttacctctcgttgaaactgggaccttccttgttgtgcatcaggacggagaactttaactgcgac |
1273343 |
T |
|
| Q |
644 |
aggagtatggtctagaagacatctataaacaggaacataaccaccttctccaatcctaagtgactcagcnnnnnnnctcgtcgcagcttcaatctcctca |
743 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||| || |||| |||||||||||||||||||||||| |
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| T |
1273342 |
aggagtatggtctagaagacatttataaacgggaccataaccaccttctccaatcttaagcgagtcagtgaagaaactcgtcgcagcttcaatctcctca |
1273243 |
T |
|
| Q |
744 |
attgcataccttctata |
760 |
Q |
| |
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||||||||||||||||| |
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|
| T |
1273242 |
attgcataccttctata |
1273226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 12663515 - 12663601
Alignment:
| Q |
115 |
tcaattttcttatttgcctgcttaaacaaagcacaacaaattcaagtttagctagcaatcttaattttcaatcatgaaaaggaaacaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
12663515 |
tcaattttcttattttcctgcttaaaaaaagcacaacaaattcaagtttagctagcaaacttaattttcaat-atgaaaaggaaacaa |
12663601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 27006342 - 27006419
Alignment:
| Q |
309 |
catcttttcttcaaaattttgcacccagaatcacaaaacaaaccaatccacccgaaatcaccaaataacaaaagcaaa |
386 |
Q |
| |
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||||||| ||| |||||||| || ||||||||| |||||||||||||||||| ||| |||||| |||| ||||||| |
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| T |
27006342 |
catctttactttgaaattttgaactcagaatcaccaaacaaaccaatccacccagaattaccaaacaacataagcaaa |
27006419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 6102882 - 6102943
Alignment:
| Q |
325 |
ttttgcacccagaatcacaaaacaaaccaatccacccgaaatcaccaaataacaaaagcaaa |
386 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
6102882 |
ttttgcatccaaaatcaacaaacaaaccaatccacccagaatcaccaaacaacaaaagcaaa |
6102943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 698
Target Start/End: Original strand, 50440299 - 50440420
Alignment:
| Q |
577 |
tgcttacctctcgttgaaactgtgagcttccttgttgtgcatcaggatgaagaactttaactgcaacaggagtatggtctagaagacatctataaacagg |
676 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||||| |||||| || | ||||| || ||||||||||| |||||||| ||||| || || |||| || |
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| T |
50440299 |
tgcttacctcgcgttgaaactgcgatcgtccttgtgctgcatcggggcgtagaaccttgactgcaacaggtgtatggtccagaaggcacttaaaaactgg |
50440398 |
T |
|
| Q |
677 |
aacataaccaccttctccaatc |
698 |
Q |
| |
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| |||| || |||||||||||| |
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| T |
50440399 |
accatatcctccttctccaatc |
50440420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 35534889 - 35534810
Alignment:
| Q |
307 |
aacatcttttcttcaaaattttgcacccagaatcacaaaacaaaccaatccacccgaaatcaccaaataacaaaagcaaa |
386 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| ||||| ||||||| |||||||||| ||| |||||| |||| ||||||| |
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| T |
35534889 |
aacatctttactttgaaattttgcactcaggatcaccaaacaaatcaatccacccagaattaccaaacaacataagcaaa |
35534810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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