View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_low_10 (Length: 430)
Name: NF19507_low_10
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 42397549 - 42397145
Alignment:
| Q |
17 |
aaaaaggataaaaagaataatagaaaggtgatgttagtttattgctatattttgcatattgcttagttccctaacttcatgttcatccagtgacatgaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42397549 |
aaaaaggataaaaagaataatagaaaggtgatgtttgtttattgctatattttgcatattgcttagttccctaacttcatgttcatccagtgacatgaag |
42397450 |
T |
|
| Q |
117 |
gaagttgtggcttnnnnnnng-tagcgttaagttggatttagtcnnnnnnnnctattttttgtaaagatggtaaattattatgatcctataaaaggagat |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42397449 |
gaagttgtggcttaaaaaaaaatagcgttaagttggatttagtcaaaaaaa-ctattttttgtaaagatggtaaattattatgatcctataaaaggagat |
42397351 |
T |
|
| Q |
216 |
atttgagcctctaattactctcctttcaactgtttctaaaaggtgtgtgacattgcttcttcccgtaatactcgtataagtaacagagtctatgttcatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42397350 |
atttgagcctctaattactctcctttcaactgtttctaaaaggtgtgtgacattgcttcttcccgtaatactcgtataagtaacagagtctatgttcatt |
42397251 |
T |
|
| Q |
316 |
tagtacccaaaaataaagtctatgttcatactataatatatgactactactaatttttagtgaataattgagnnnnnnnncttcaattaatcatctattt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
42397250 |
tagtacccaaaaataaagtctatgttcatactataatatatgactactactaatttttagtgaataattgag-tttttttcttcaattaatcatatattt |
42397152 |
T |
|
| Q |
416 |
tggtcct |
422 |
Q |
| |
|
||||||| |
|
|
| T |
42397151 |
tggtcct |
42397145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University