View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19507_low_11 (Length: 412)

Name: NF19507_low_11
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19507_low_11
NF19507_low_11
[»] chr5 (2 HSPs)
chr5 (18-400)||(8181201-8181582)
chr5 (216-263)||(9260620-9260667)
[»] chr1 (5 HSPs)
chr1 (239-336)||(40980836-40980934)
chr1 (216-263)||(29394053-29394100)
chr1 (216-263)||(30402898-30402945)
chr1 (216-263)||(30409455-30409502)
chr1 (229-263)||(35163367-35163401)
[»] chr2 (1 HSPs)
chr2 (239-336)||(26450426-26450524)
[»] chr7 (2 HSPs)
chr7 (239-336)||(1972899-1972998)
chr7 (216-263)||(13947989-13948036)
[»] chr8 (2 HSPs)
chr8 (216-263)||(11144109-11144156)
chr8 (216-250)||(44552136-44552170)
[»] chr3 (1 HSPs)
chr3 (216-263)||(55040127-55040174)
[»] chr6 (1 HSPs)
chr6 (216-250)||(32446116-32446150)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 8181582 - 8181201
Alignment:
Q  18 gtattttactattgatatattgttcttctaggttcacttttgattctattgcgtgcagcaaattcttatagagattgagagcggagagtaaaaattagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181582 gtattttactattgatatattgttcttctaggttcacttttgattctattgcgtgcagcaaattcttatagagattgagagcggagagtaaaaattagag 8181483  T
Q  118 tcaagataattaaacaccatgaggtaattttatcttacgttttttagatatgtttttgatctatgatatttatttcatctaatatgattatcagtaactt 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181482 tcaagataattaaacaccatgaggtaattttatctt-cgttttttagatatgtttttgatctatgatatttatttcatctaatatgattatcagtaactt 8181384  T
Q  218 atagggttctgatgttgtttatagctcactggtgtcctatttaatgtataccttagcctcatttttatgtggaatgatgcagatctatagggggcgcctc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181383 atagggttctgatgttgtttatagctcactggtgtcctatttaatgtataccttagcctcatttttatgtggaatgatgcagatctatagggggcgcctc 8181284  T
Q  318 tttgtggttatttagaggtatactgctgttacgaggttttcctttcaatgctattttccctctgtatcgtgctattcatctct 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  8181283 tttgtggttatttagaggtattctgctgttacgaggttttcctttcaatgctattttccctctgtgtcgtgctattcttctct 8181201  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 9260667 - 9260620
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9260667 ttataggatcctgatgttgtttatagctcactggtgtcctatttaatg 9260620  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 40980934 - 40980836
Alignment:
Q  239 tagctcactggtgtcctatttaatgtataccttagcctcat-ttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 336  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  40980934 tagctcactggtgtcctatttaatgtataccttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 40980836  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 29394100 - 29394053
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||||||||||||||||||| ||||||||| |||||||    
T  29394100 ttataggatcctgatgttgtttatagctcagtggtgtcctttttaatg 29394053  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 30402945 - 30402898
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30402945 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30402898  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 30409502 - 30409455
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30409502 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30409455  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 35163367 - 35163401
Alignment:
Q  229 atgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||||||||||||||||||||||| |||||||    
T  35163367 atgttgtttatagctcactggtgtcctttttaatg 35163401  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 26450426 - 26450524
Alignment:
Q  239 tagctcactggtgtcctatttaatgtataccttagcctcattttta-tgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 336  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  26450426 tagctcagtggtgtcctatttaatgtatactttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 26450524  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 1972899 - 1972998
Alignment:
Q  239 tagctcactggtgtcctatttaatgtataccttagcctca--tttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 336  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||| || ||| |||||||| ||||||| |||||||||| ||||    
T  1972899 tagctcactggtgtcctatttaatgtataccttagcctcatttttttgtgtggaaagatgtagttctttagggggcacctctttttggttatttaaaggt 1972998  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 13947989 - 13948036
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  13947989 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 13948036  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 11144109 - 11144156
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  11144109 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 11144156  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 44552136 - 44552170
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggt 250  Q
    ||||||||| |||||||||||||||||||||||||    
T  44552136 ttatagggtcctgatgttgtttatagctcactggt 44552170  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 55040174 - 55040127
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 263  Q
    ||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  55040174 ttataggatcctgacgttgtttatagctcactggtgtcctttttaatg 55040127  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 32446116 - 32446150
Alignment:
Q  216 ttatagggttctgatgttgtttatagctcactggt 250  Q
    |||||||||||||||||||||||||||| ||||||    
T  32446116 ttatagggttctgatgttgtttatagcttactggt 32446150  T

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