View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_12 (Length: 371)
Name: NF19507_low_12
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 29026573 - 29026245
Alignment:
| Q |
17 |
aatatttctacagattctagaaatgtatttttccaatttttgtattctctctatcacaattgttattatgcaagtcttcaatgtccttgttagcaattta |
116 |
Q |
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| T |
29026573 |
aatatttctacagattctaaaaatgtatttt-ccagtttttgtattctctctatcacaattgttgttatgcaagtcttcaatgtccttgttagcaattta |
29026475 |
T |
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| Q |
117 |
aaacgaatagcagtttaagaaaatgaaaagtgaaaatatttttataatgtaacaaatccaacattctaacatttatggattcctct-----attggtgct |
211 |
Q |
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| T |
29026474 |
aaacgaatagcagtttaagaaaatgaaaagtgaaaata-------------acaaatccaacattctaacatttgtggattcctctcctctattggtgct |
29026388 |
T |
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| Q |
212 |
tttttgcagatatgtgagcatagatttgtcaaacatacatgagattgagtgccctatttgctttggtatgtaatttataattaaggctagattttcttat |
311 |
Q |
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| T |
29026387 |
tctttgcagatatgtgagcatagatttgtcaaacatacatgagattgagtgccctatttgctttggtatgtaatttataattaaggctagattttcttat |
29026288 |
T |
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| Q |
312 |
ttattactgtaaatatgggtaattttactaaaaaatttgttct |
354 |
Q |
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| T |
29026287 |
ttattactgtaaatatgggtaattttactaaaaaatttgttct |
29026245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 155 - 357
Target Start/End: Complemental strand, 36068504 - 36068305
Alignment:
| Q |
155 |
tttttataatgtaacaaatccaacattctaacatttatggattcctctattggtgcttttttgcagatatgtgagcatagatttgtcaaacatacatgag |
254 |
Q |
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| T |
36068504 |
tttttataatgtaacggatccaacattctaacgtttgtggattcccctattggt--ttattttcaggtatgcgagcatagatttgtcaagcatgtatgag |
36068407 |
T |
|
| Q |
255 |
attgagtgccctatttgctttggtatgtaatttataattaaggctagattttcttatttattactgtaaatatgggtaattttactaaaaaatttgttct |
354 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||| | |||| |||||||| |
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| T |
36068406 |
attgagtgccctatttgctttggtatgtaatttattattaatgctagatttccttatttattactgcaaatatgggtaatttta-tgaaaattttgttct |
36068308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 357
Target Start/End: Original strand, 27593258 - 27593524
Alignment:
| Q |
96 |
aatgtccttgttagcaatttaaaacgaatagcagtttaagaaaatgaaaagtgaaaatatttttataatgtaa-caaatccaacattctaacatttatgg |
194 |
Q |
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| T |
27593258 |
aatgtcattgttagaactttaaaaggactggaagtttaagaaaatgaaatgtggaaatattttcataatgtaaacgggttctacattctaatatttttgg |
27593357 |
T |
|
| Q |
195 |
attcctctattggtgcttttttgcagatatgtgagcatagatttgtcaaa----catacatgagattgagtgccctatttgctttggtatgtaatttata |
290 |
Q |
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| T |
27593358 |
attcctctattgatgtttatttacaaatatgtgagcatagatttgtcaaacaaacatacatgagattgagtgccctatttgccttggtatgtaatttata |
27593457 |
T |
|
| Q |
291 |
attaaggctagattttcttatttattactgtaaatatgggtaattttactaaaaaatttgttctaat |
357 |
Q |
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| T |
27593458 |
attaatgctagatttccttatttattactgcaaatataataaattttactgtaaattttgttctaat |
27593524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 35145834 - 35145759
Alignment:
| Q |
44 |
tttttccaatttttgtattctctctatcacaattgttattatgcaagtcttcaatgtccttgttagcaatttaaaa |
119 |
Q |
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| T |
35145834 |
tttttccagattttgttttatctctaccacaattgttactatgcgagtcttccatgtccttgttagcaacttaaaa |
35145759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 35145760 - 35145688
Alignment:
| Q |
96 |
aatgtccttgttagcaatttaaaacgaatagcagtttaagaaaatgaaaagtgaaaatatttttataatgtaa |
168 |
Q |
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| T |
35145760 |
aatgtccttgctagaaatttaaaatgactagtagtttaagaaaattaaatgtgaaaatattttcatactgtaa |
35145688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 27593193 - 27593259
Alignment:
| Q |
53 |
tttttgtattctctctatcacaattgttattatgcaagtcttcaatgtccttgttagcaatttaaaa |
119 |
Q |
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| T |
27593193 |
ttttcgtattatctctaccacaaatgttaccatgcaagtcttccatgtccttgttagcaacttaaaa |
27593259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 35145636 - 35145582
Alignment:
| Q |
233 |
agatttgtcaaacatacatgagattgagtgccctatttgctttggtatgtaattt |
287 |
Q |
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|||| ||||||||||||||||||||||| |||||||| | |||||||||||||| |
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| T |
35145636 |
agatatgtcaaacatacatgagattgagcaccctatttaccttggtatgtaattt |
35145582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 52906272 - 52906236
Alignment:
| Q |
89 |
agtcttcaatgtccttgttagcaatttaaaacgaata |
125 |
Q |
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| T |
52906272 |
agtcttccatctccttgttagcaatttaaaacgaata |
52906236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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