View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19507_low_13 (Length: 368)

Name: NF19507_low_13
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19507_low_13
NF19507_low_13
[»] chr4 (3 HSPs)
chr4 (43-359)||(25744219-25744535)
chr4 (225-359)||(25740519-25740653)
chr4 (278-359)||(17383423-17383504)
[»] chr2 (1 HSPs)
chr2 (278-359)||(8535008-8535089)
[»] scaffold0515 (1 HSPs)
scaffold0515 (78-118)||(10111-10151)
[»] scaffold0152 (2 HSPs)
scaffold0152 (78-118)||(27731-27771)
scaffold0152 (78-118)||(36507-36547)
[»] scaffold0055 (8 HSPs)
scaffold0055 (78-118)||(17958-17998)
scaffold0055 (78-118)||(20688-20728)
scaffold0055 (78-118)||(23927-23967)
scaffold0055 (78-118)||(37160-37200)
scaffold0055 (78-118)||(45009-45049)
scaffold0055 (78-118)||(57734-57774)
scaffold0055 (78-115)||(29273-29310)
scaffold0055 (78-118)||(76425-76464)
[»] scaffold0052 (8 HSPs)
scaffold0052 (78-118)||(8916-8956)
scaffold0052 (78-118)||(12118-12158)
scaffold0052 (78-118)||(16563-16603)
scaffold0052 (78-118)||(20931-20971)
scaffold0052 (78-118)||(39857-39897)
scaffold0052 (78-118)||(55338-55378)
scaffold0052 (78-115)||(66755-66792)
scaffold0052 (78-118)||(43328-43367)
[»] scaffold0986 (1 HSPs)
scaffold0986 (78-116)||(202-240)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 25744535 - 25744219
Alignment:
Q  43 atgaagaatgaattgaatcaacagtggatgaatctagtggatcgtggcagcaaggtcactctgccacttacaatactatgtcactcgtctgatgatattt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  25744535 atgaagaatgaattgaatcaacagtggatgaatctagtggatcgtggcagcaaggtcactctaccacttacaatactatgtcactcgtctgataatattt 25744436  T
Q  143 ccttgtacttggttttagtacataaccaacgggtgttatatggcgcaagggcaatgtaagtgcaaattactctgagaaggactatacagttaagttcaag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25744435 ccttgtacttggttttagtacataaccaacgggtgttatatggcgcaagggcaatgtaagtgcaaattattctgagaaggactatacagttaagttcaag 25744336  T
Q  243 taaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatg 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744335 taaaagtgtaacatacctgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatg 25744236  T
Q  343 caaataagtagaataat 359  Q
    |||||||||||||||||    
T  25744235 caaataagtagaataat 25744219  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 25740653 - 25740519
Alignment:
Q  225 tatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 324  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740653 tatactgttaagtttaagtaaaagtgtaacataccagggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 25740554  T
Q  325 ctcctctgcgtagtcatgcaaataagtagaataat 359  Q
    |||||||||||||||||||||||||||||||||||    
T  25740553 ctcctctgcgtagtcatgcaaataagtagaataat 25740519  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 17383504 - 17383423
Alignment:
Q  278 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 359  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  17383504 aaaaagccttaaaacaacagcaactaaagcaattcattttccaatctctcctctgcatagtcataaaaataagtataataat 17383423  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 8535089 - 8535008
Alignment:
Q  278 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8535089 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcatagtcatgaaaataagtagaataat 8535008  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 10151 - 10111
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10151 agtggatcgtggcagcaaggccactctgccacttacaatac 10111  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 27771 - 27731
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27771 agtggatcgtggcagcaaggccactctgccacttacaatac 27731  T

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Target: scaffold0152; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 36547 - 36507
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36547 agtggatcgtggcagcaaggccactctgccacttacaatac 36507  T

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Target: scaffold0055 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 17998 - 17958
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17998 agtggatcgtggcagcaaggccactctgccacttacaatac 17958  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 20688 - 20728
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20688 agtggatcgtggcagcaaggccactctgccacttacaatac 20728  T

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Target: scaffold0055; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 23927 - 23967
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  23927 agtggatcgtggcagcaaggccactctgccacttacaatac 23967  T

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Target: scaffold0055; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 37160 - 37200
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  37160 agtggatcgtggcagcaaggccactctgccacttacaatac 37200  T

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Target: scaffold0055; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 45009 - 45049
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45009 agtggatcgtggcagcaaggccactctgccacttacaatac 45049  T

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Target: scaffold0055; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 57734 - 57774
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  57734 agtggatcgtggcagcaaggccactctgccacttacaatac 57774  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 29310 - 29273
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaa 115  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29310 agtggatcgtggcagcaaggccactctgccacttacaa 29273  T

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Target: scaffold0055; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 76425 - 76464
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  76425 agtggatcgtggcagcaaggccactctg-cacttacaatac 76464  T

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Target: scaffold0052 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 8916 - 8956
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8916 agtggatcgtggcagcaaggccactctgccacttacaatac 8956  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 12118 - 12158
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12118 agtggatcgtggcagcaaggccactctgccacttacaatac 12158  T

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Target: scaffold0052; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 16603 - 16563
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16603 agtggatcgtggcagcaaggccactctgccacttacaatac 16563  T

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Target: scaffold0052; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 20931 - 20971
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20931 agtggatcgtggcagcaaggccactctgccacttacaatac 20971  T

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Target: scaffold0052; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 39897 - 39857
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39897 agtggatcgtggcagcaaggccactctgccacttacaatac 39857  T

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Target: scaffold0052; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 55338 - 55378
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  55338 agtggatcgtggcagcaaggccactctgccacttacaatac 55378  T

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Target: scaffold0052; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 66755 - 66792
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaa 115  Q
    |||||||||||||||||||| |||||||||||||||||    
T  66755 agtggatcgtggcagcaaggccactctgccacttacaa 66792  T

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Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 43328 - 43367
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaatac 118  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  43328 agtggatcgtggcagcaaggccactctg-cacttacaatac 43367  T

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Target: scaffold0986 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 240 - 202
Alignment:
Q  78 agtggatcgtggcagcaaggtcactctgccacttacaat 116  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  240 agtggatcgtggcagcaaggccactctgccacttacaat 202  T

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