View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_14 (Length: 358)
Name: NF19507_low_14
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 5686534 - 5686862
Alignment:
| Q |
12 |
acagacaacacaggaaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686534 |
acagacaacacaggaaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatc |
5686633 |
T |
|
| Q |
112 |
caggactcatttatgatgcatcctacatggattaccttctttacctttgcaatcttaatttaacacaacacataaaccttacatataattgtccaaaccc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686634 |
caggactcatttatgatgcatcctacatggattaccttctttacctttgtaatcttaatttaacacaacacataaaccttacatataattgtccaaaccc |
5686733 |
T |
|
| Q |
212 |
actacctcaaccatttgatctcaactatccatcaatacaaatccataaactcaattacaccaaaactataaagaggacagtgacaaatgttggtagtagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686734 |
actacctcaaccatttgatctcaactatccatcaatacaaatccataaactcaattacaccaaaactataaagaggacagtgacaaatgttggtagtagc |
5686833 |
T |
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| Q |
312 |
aagagtgtttacaagtttattgctaatac |
340 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
5686834 |
aagagtgtttacaagtttattgctaatac |
5686862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 5698739 - 5699067
Alignment:
| Q |
12 |
acagacaacacaggaaatccaatgactgatgaaacaggaaaccctacaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatc |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698739 |
acagacaacacaggaaatccaattacagatgaaacaggaaatcctgcaacaccttttgcaatgggttcaggccacttctaccctaaaagagcatcagatc |
5698838 |
T |
|
| Q |
112 |
caggactcatttatgatgcatcctacatggattaccttctttacctttgcaatcttaatttaacacaacacataaaccttacatataattgtccaaaccc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698839 |
caggactcatttatgatgcatcctacatggattaccttctttacctttgtaatcttaatttaacacaacacataaaccttacatataattgtccaaaccc |
5698938 |
T |
|
| Q |
212 |
actacctcaaccatttgatctcaactatccatcaatacaaatccataaactcaattacaccaaaactataaagaggacagtgacaaatgttggtagtagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5698939 |
actacctcaaccatttgatctcaactatccatcaatacaaatccataaactcaattacaccaaaactataaagaggacagtgacaaatgttggtagtagc |
5699038 |
T |
|
| Q |
312 |
aagagtgtttacaagtttattgctaatac |
340 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
5699039 |
aagagtgtttacaagtttattgctaatac |
5699067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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