View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_low_17 (Length: 343)
Name: NF19507_low_17
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 7869692 - 7870022
Alignment:
| Q |
8 |
acttctacttcatctcaagagagacagaaaatatgattaatccgaagatgattatacttatagtgatgatgatgaaagaatgaaaaatctgaaatcaatg |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7869692 |
acttctacttcttctcaagagagacagaaaatatgattaatccgaagatgattatacttatagtgatgatgatgaaagaatgaaaaatctggaatcaatg |
7869791 |
T |
|
| Q |
108 |
agcatgtgaagttcctctaattaagctttggagtgggattatggcgtcgacacattttcagagcaagcggttaaccacggaaagaaaggagtactgaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7869792 |
agcatgtgaagttcctctaattaagctttggagagggattatggcgtcgacacattttcagagcaagcggttaaccacggaaagaaaggagtactgaaac |
7869891 |
T |
|
| Q |
208 |
gagctggattttgaacggcataagaggtattgttggattgagt-gaaaaatattggaaatttgaaaaataaaggaaatgaataagagatatggttttcaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7869892 |
gagctggattttgaacggcataagaggtattgttggattgagtggaaaaatattggaaatttgaaaaataaaggaaatgaagaagagatatggttttcaa |
7869991 |
T |
|
| Q |
307 |
gaggagtgtatttgtggtattgaaagtgtta |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7869992 |
gaggagtgtatttgtggtattgaaagtgtta |
7870022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 32336965 - 32337016
Alignment:
| Q |
71 |
tgatgatgatgaaagaatgaaaaatctgaaatcaatgagcatgtgaagttcct |
123 |
Q |
| |
|
|||||||||||||| |||||||||| || || ||||||||||||||||||||| |
|
|
| T |
32336965 |
tgatgatgatgaaa-aatgaaaaatttggaagcaatgagcatgtgaagttcct |
32337016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 32337176 - 32337248
Alignment:
| Q |
239 |
gttggattgagtgaaaaatattggaaatttgaaaaataaaggaaatgaataagagatatggttttcaagagga |
311 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||| |||| | ||||| ||| || |||||||| ||||||| |
|
|
| T |
32337176 |
gttggattggatggaaaatattgggaatttgaaaaagaaagaagatgaagaagtgagatggttttgaagagga |
32337248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University