View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_21 (Length: 310)
Name: NF19507_low_21
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 4546883 - 4546596
Alignment:
| Q |
10 |
ttaattgaaagtaatcacatcacacatgtcagacacgagacgaaactaaccggcgtgggttgagagagaagaagcacgttgtgtaagaataacacgcaaa |
109 |
Q |
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| T |
4546883 |
ttaattgaaagtaa----atcacacatgtcagacacgaaactaaactaaccggcgtgggttgagagagaagaagcacgttgtgtaagaataacacgcaaa |
4546788 |
T |
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| Q |
110 |
ttcccatcttgaccttcgaataaacaaataagaaccgctgctctcttgttttgtttgtaaattgaagtttctttgagtggattggtgttggaaggtgatt |
209 |
Q |
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| T |
4546787 |
ttcccatcttgaccttcgaataaacaaataagaaccgctgctctcttgttttgtttgtaaattgaagtttcttttagtggattggtgttggaaggtgatt |
4546688 |
T |
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| Q |
210 |
taaggtgatcaagtaatgtttgtaacctttg---------tgaagacatattcttaattctacaaactcattgtcgtttgtcaaatctagtt |
292 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4546687 |
taaggtgatgaagtaatgtttgtaacctttgtgaaccgtttgaagacatattcttaattctacaaactcattgtcgtttgtcaaatctagtt |
4546596 |
T |
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