View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_23 (Length: 298)
Name: NF19507_low_23
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4134582 - 4134306
Alignment:
| Q |
1 |
atctgggatagtttcacacaccctgcggatgcagctgttccatcgatgaagattgcatctaacaaagttacaggtaagcaaattgcatttgtatcaagaa |
100 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
4134582 |
atctgggatagtttcacacaccctgcagattcagctgttccatcgatgaaaattgcatctaataaagttacaggtaagcaaattgcttttgtagcaagaa |
4134483 |
T |
|
| Q |
101 |
aaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnntttattg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
4134482 |
aaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagatt---ggatgtaccagaagttttcatttggaaagataaaaaaatttattg |
4134386 |
T |
|
| Q |
201 |
gagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttag |
280 |
Q |
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| T |
4134385 |
gagaactggtccatggaatggaagggtttttctcggaacgccaagattgtcaaccgaatatctatttggttggcgtttag |
4134306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4145384 - 4145108
Alignment:
| Q |
1 |
atctgggatagtttcacacaccctgcggatgcagctgttccatcgatgaagattgcatctaacaaagttacaggtaagcaaattgcatttgtatcaagaa |
100 |
Q |
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|||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
4145384 |
atctgggatagtttcacacacccttcagattcagctgttccatcgatgaaaattgcatctaacaaagttacaggtaagcaaattgcttttgtagcaagaa |
4145285 |
T |
|
| Q |
101 |
aaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnntttattg |
200 |
Q |
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| T |
4145284 |
aaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagatt---ggatgtaccagaagttttcatttggaaagataaaaaaatttattg |
4145188 |
T |
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| Q |
201 |
gagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttag |
280 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4145187 |
gagaactggtccatggaatggaagagtttttctcggaacgccaagattgtcaaccgaatatctatttggttggcgtttag |
4145108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 4153387 - 4153113
Alignment:
| Q |
1 |
atctgggatagtttcacacaccctgcggatgcagctgttccatcgatgaagattgcatctaacaaagttacaggtaagcaaattgcatttgtatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| ||||| |||| ||||||||| |||| | ||||||||||||| |
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| T |
4153387 |
atctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaa |
4153288 |
T |
|
| Q |
101 |
aaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnntttattg |
200 |
Q |
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||||||| |||||||||||||||||||||| | || |||| |||||||||| ||||| ||||||||||||||||||||||||| || |||| |
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| T |
4153287 |
aaagtgataatgatccttcttcaggacattattcagctagtcttgaaagatt---ggatgcaccagaagttttcatttggaaagataaaaatattcattg |
4153191 |
T |
|
| Q |
201 |
gagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgttt |
278 |
Q |
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|||||| |||||||||||||||||||||||||| ||| | || ||||||| |||||| ||| || ||||||||||| |
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| T |
4153190 |
gagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttt |
4153113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4124037 - 4123802
Alignment:
| Q |
1 |
atctgggatagtttcacacaccctgcggatgcagctgttccatcgatgaagattgcatctaacaaagttacaggtaagcaaattgcatttgtatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| ||||| |||| ||||||||| |||| | ||||||||||||| |
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| T |
4124037 |
atctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaa |
4123938 |
T |
|
| Q |
101 |
aaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnntttattg |
200 |
Q |
| |
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||||||| |||||||||||||||||||||| | || |||| |||||||||| ||||| ||||||||||||||||||| | ||| || |||| |
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| T |
4123937 |
aaagtgataatgatccttcttcaggacattattcagctagtcttgaaagatt---ggatgcaccagaagttttcatttggtatgataagaaaattcattg |
4123841 |
T |
|
| Q |
201 |
gagaactggtccatggaatggaagggtttttcttggaac |
239 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||| |
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| T |
4123840 |
gagaactggtccatggaatggattggtttttctcggaac |
4123802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 4163737 - 4163466
Alignment:
| Q |
4 |
tgggatagtttcacacaccctgcggatgcagctgttccatcgatgaagattgcatctaacaaagttacaggtaagcaaattgcatttgtatcaagaaaaa |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||| |||| || || ||| | || | |||||||||||||||| |
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| T |
4163737 |
tgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaaaa |
4163638 |
T |
|
| Q |
104 |
gtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnntttattggag |
203 |
Q |
| |
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|||| |||||||||||||||||||||| || | ||| |||||||||| ||||| |||||||||||| |||||| | ||| || ||||||| |
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| T |
4163637 |
gtgaaaatgatccttcttcaggacattatataggaagtcttgaaagatt---ggatgcaccagaagtttttatttggtatgataagagaattcattggag |
4163541 |
T |
|
| Q |
204 |
aactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgttt |
278 |
Q |
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|||||||||||||||||||| ||||||||| ||| | || ||||||| |||||| ||| || ||||||||||| |
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| T |
4163540 |
aactggtccatggaatggaacggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttt |
4163466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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