View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_30 (Length: 270)
Name: NF19507_low_30
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 30576885 - 30577147
Alignment:
| Q |
7 |
cacagacactagacaccgcacacgacaaaatgaatggacaaacaatacaaaatatatgagtatgattaattacttttggtccggaatcggtaatctgcga |
106 |
Q |
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| T |
30576885 |
cacagacactagacaccgcacacgacaaaatgaaaggacaaacaatacaaaatatatgagtatgattaattacttttggtccggaatcggtaatctgcga |
30576984 |
T |
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| Q |
107 |
acaagaagagtagctcctttggaatcaatagtaggggccatctcctctcctttagtccaatgcaaaaaggtcatctttccattagtgaaatgcttgaaaa |
206 |
Q |
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| T |
30576985 |
acaagaagagtagctcctttggcatcaatagtaggggccatctcctctcctttagtccaatgcaaaaaggtcatctttccattagtgaaatgcttgaaaa |
30577084 |
T |
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| Q |
207 |
taaaatccattagctcattatctttcatatgaccacctttatgattctgtcaatcaaatttca |
269 |
Q |
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| T |
30577085 |
taaaatccattagctcattatctttcacatgaccacctttatgattctgtcaatcaaatttca |
30577147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 30556985 - 30557121
Alignment:
| Q |
75 |
attacttttggtccggaatcggtaatctgcgaacaagaagagtagctcctttggaatcaatagtaggggccatctcctctcctttagtccaatgcaaaaa |
174 |
Q |
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| T |
30556985 |
attaccttaggtctggaatcggtaatctccgaacaagaagaattgctccttttccagcaatagcaggggccatctcctctcctttattccggtgcaagaa |
30557084 |
T |
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| Q |
175 |
ggtcatctttccattagtgaaatgcttgaaaataaaa |
211 |
Q |
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| T |
30557085 |
agtcatccttccatgacagaagtgtttgaaaataaaa |
30557121 |
T |
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