View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_31 (Length: 269)
Name: NF19507_low_31
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_31 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 46822652 - 46822384
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaatgtgtggatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46822652 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatgaataaggtggtgtatgatatggataatttccaatgtgtggatttg |
46822553 |
T |
|
| Q |
101 |
ggataaaagtatgattttgaaaatttggtttatgatgtgagtttgggctattggatgcattttcaaagtaggagacattttgttgattttggatgcatgg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46822552 |
ggataaaagtatgattttgaaaatttgatttatgatgtgagtttgggttattggatgcattttcaaagtaggagacattttgttgattttggatgcatgg |
46822453 |
T |
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| Q |
201 |
aggaatgccaccattttgcaagtagttggatcaagaattattgtggttggggttcattggcaaatgaaa |
269 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46822452 |
aggaatgccaccattttgcaagtagttggaccaagaattattgtggttggggttcattggcaaatgaaa |
46822384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 19991865 - 19991778
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaa |
88 |
Q |
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||||||||||| ||||| ||||||||||||||||||| | |||| | || | | | ||||||| ||||||||||| |||||||||| |
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| T |
19991865 |
tcatgagacatagtggggttagttgattgagatgaaaattattgagattgatgttggtaaggtgaagtatgatatgggtaatttccaa |
19991778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 9680123 - 9679855
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaatgtgtggatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9680123 |
tcatgagacatggtgggactagttgattgagataaaaaatgttgatagtggtatggataacgtggtgtatgatatggataatttccaatgtgtggatttg |
9680024 |
T |
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| Q |
101 |
ggataaaagtatgattttgaaaatttggtttatgatgtgagtttgggctattggatgcattttcaaagtaggagacattttgttgattttggatgcatgg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9680023 |
ggataaaaatatgattttgaaaatttggtttatgatgtgagtttgggttattggatgcattttcaaagtaggagacattttgttgattttggatgcatgg |
9679924 |
T |
|
| Q |
201 |
aggaatgccaccattttgcaagtagttggatcaagaattattgtggttggggttcattggcaaatgaaa |
269 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9679923 |
aggaatgccaccattttgcaagtagttggaccaagaattattgtggttggggttcattggcaaatgaaa |
9679855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 19698093 - 19698360
Alignment:
| Q |
2 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaatgtgtggatttgg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19698093 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatagtgatatggataaggtggtgtatgatatggataatttccaatgtgtgggtttgg |
19698192 |
T |
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| Q |
102 |
gataaaagtatgattttgaaaatttggtttatgatgtgagtttgggctattggatgcattttcaaagtaggagacattttgttgattttggatgcatgga |
201 |
Q |
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|||||||| |||||||||||||||| | ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19698193 |
gataaaagcatgattttgaaaatttaggttaggatgtgggtttgggttattggatgcattttcaaagtaggagacattttgttgattttggatgcatgga |
19698292 |
T |
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| Q |
202 |
ggaatgccaccattttgcaagtagttggatcaagaattattgtggttggggttcattggcaaatgaaa |
269 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19698293 |
ggaatgccaccattttgcaagtagttggaccaagaattattgtggttggggttcattggcaaatgaaa |
19698360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 32603672 - 32603939
Alignment:
| Q |
2 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaatgtgtggatttgg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32603672 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatagtgatatgggtaaggtggtgtatgatatggataatttccaatgtgtgggtttgg |
32603771 |
T |
|
| Q |
102 |
gataaaagtatgattttgaaaatttggtttatgatgtgagtttgggctattggatgcattttcaaagtaggagacattttgttgattttggatgcatgga |
201 |
Q |
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|||||||| |||||||||||||||| | ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32603772 |
gataaaagcatgattttgaaaatttaggttaggatgtgggtttgggttattggatgcattttcaaagtaggagacattttgttgattttggatgcatgga |
32603871 |
T |
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| Q |
202 |
ggaatgccaccattttgcaagtagttggatcaagaattattgtggttggggttcattggcaaatgaaa |
269 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
32603872 |
ggaatgccaccattttgcaagtagttggaccaagaattattgtggtcggggttcattggcaaatgaaa |
32603939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23563042 - 23563139
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaatgtgtggatt |
98 |
Q |
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||||||||||| |||| ||||||||||||||||||| |||||| | || ||| ||||||||| ||||||||||| |||||||||| | ||||||| |
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| T |
23563042 |
tcatgagacatactggggttagttgattgagatgaaaattgttgagattgatattgataaggtgaagtatgatatgggtaatttccaaagggtggatt |
23563139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48264721 - 48264808
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaa |
88 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||||| | || ||| | ||||||| ||||||||||| |||||||||| |
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| T |
48264721 |
tcatgagacatagtggggttagttgattgagatgaaaattgttgagattgatattggtaaggtgaagtatgatatgggtaatttccaa |
48264808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 19793075 - 19793344
Alignment:
| Q |
2 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatag--tggtatggataaggtggtgtatgatatggataatttccaatgtgtggattt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19793075 |
catgagacatggtgggactagttgattgagatgaaaaatgttgatagagtgatatgggtaaggtggtgtatgatatggataatttccaatgtgtgggttt |
19793174 |
T |
|
| Q |
100 |
gggataaaagtatgattttgaaaatttggtttatgatgtgagtttgggctattggatgcattttcaaagtaggagacattttgttgattttggatgcatg |
199 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19793175 |
gggataaaagcatgattttgaaaatttaggttaggatgtgggtttgggttattggatgcattttcaaagtaggagacattttgttgattttggatgcatg |
19793274 |
T |
|
| Q |
200 |
gaggaatgccaccattttgcaagtagttggatcaagaattattgtggttggggttcattggcaaatgaaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
19793275 |
gaggaatgccaccattttgcaagtagttggaccaagaattattgtggttggggttcattggcaaatgaaa |
19793344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 20175307 - 20175353
Alignment:
| Q |
77 |
gataatttccaatgtgtggatttgggataaaagtatgattttgaaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
20175307 |
gataatttccaatgtgtggatttgggataaaagcatgattttgaaaa |
20175353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31071718 - 31071631
Alignment:
| Q |
1 |
tcatgagacatggtgggactagttgattgagatgaaaaatgttgatagtggtatggataaggtggtgtatgatatggataatttccaa |
88 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||||| || ||| | ||||||| |||||||||| |||||||||| |
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| T |
31071718 |
tcatgagacatagtggggttaattgattgagatgaaaattgttgatattgatattggtaaggtgaagtatgatatgagtaatttccaa |
31071631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 9217355 - 9217391
Alignment:
| Q |
150 |
attggatgcattttcaaagtaggagacattttgttga |
186 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |
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| T |
9217355 |
attggatgcattttcaaaggatgagacattttgttga |
9217391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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