View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_low_40 (Length: 242)
Name: NF19507_low_40
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 40894938 - 40894728
Alignment:
| Q |
17 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaaatcatca---aactaatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40894938 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgccttcagaatcatcatcaaactaatca |
40894839 |
T |
|
| Q |
114 |
tcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctc |
213 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40894838 |
tcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctc |
40894739 |
T |
|
| Q |
214 |
ctgcatgaatc |
224 |
Q |
| |
|
|| || ||||| |
|
|
| T |
40894738 |
ctacaagaatc |
40894728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 44153434 - 44153567
Alignment:
| Q |
91 |
cttcaaaatcatcaaactaatcatcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtc |
190 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153434 |
cttcagaatcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtc |
44153533 |
T |
|
| Q |
191 |
ctcagattctttgccttttcctcctgcatgaatc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44153534 |
ctcagattctttgccttttcctcctgcatgaatc |
44153567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 40898077 - 40898296
Alignment:
| Q |
15 |
atgaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaaatcatcaaactaat-ca |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
40898077 |
atgaacatctactattactattataca------gacatttttcgcttgtcattgtcgcaagagattttggttttgccttcagaatcatcaaactaaggca |
40898170 |
T |
|
| Q |
114 |
tcttcag------------aatcatcattcgcatctgctgatttccacttcggcacatcaga---gctcagctcctccaaggttgaaatgtcctcagatt |
198 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40898171 |
taatcagcaccaaaaacagaatcatcatttgcatctgctgatttccacttctgcacatcagaagagctcagctcctccaaggttgaaatgtcctcagatt |
40898270 |
T |
|
| Q |
199 |
ctttgccttttcctcctgcatgaatc |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
40898271 |
ctttgccttttcctcctgcatgaatc |
40898296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University