View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19507_low_41 (Length: 228)

Name: NF19507_low_41
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19507_low_41
NF19507_low_41
[»] chr1 (2 HSPs)
chr1 (17-212)||(48753392-48753587)
chr1 (17-212)||(49052027-49052222)
[»] chr2 (1 HSPs)
chr2 (17-212)||(18136475-18136670)
[»] chr4 (7 HSPs)
chr4 (127-209)||(20489181-20489263)
chr4 (28-95)||(19389507-19389574)
chr4 (19-122)||(20488984-20489087)
chr4 (104-184)||(15558391-15558471)
chr4 (97-200)||(15565604-15565707)
chr4 (97-200)||(15578251-15578354)
chr4 (98-212)||(15538514-15538627)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 48753587 - 48753392
Alignment:
Q  17 taggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttc 116  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48753587 taggaactccctcacttggaccatcaacactaggaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttc 48753488  T
Q  117 atcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactgaaaatgcacggagattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  48753487 atcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggaccaaaaatgcacggagattc 48753392  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 49052222 - 49052027
Alignment:
Q  17 taggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttc 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||| |||||    
T  49052222 taggaactccctcacttggaccatcaacaccaggaatgaaatccattctcgggtcaatccaattaaaaggcctcacaattgtaaactccaaccccttttc 49052123  T
Q  117 atcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactgaaaatgcacggagattc 212  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  49052122 atcaccttcaccataaatcaacctttcaatcaactgcttcgcacatgcatacgaccatctttgcttttcgatcggaccgaaaatgcacggagattc 49052027  T

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Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 18136475 - 18136670
Alignment:
Q  17 taggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttc 116  Q
    ||||||||| |||||||||||||||||||| | ||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18136475 taggaactctctcacttggaccatcaacactaggaacgagatccattcttggtccaatccaattaaaaggtctcacaattgtaaactccaacccattttc 18136574  T
Q  117 atcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactgaaaatgcacggagattc 212  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||  |||||||||| ||||||    
T  18136575 atcaccttcaccataaatcaacctctcaatcaattgctttgcacatgcatatgaccatcattgattttcgatcgaaccaaaaatgcacgaagattc 18136670  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 20489181 - 20489263
Alignment:
Q  127 ccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactgaaaatgcacggaga 209  Q
    ||||||| || |||||||||||| ||||| |||||||||||||||||||| ||||||||||| | || ||||||||| |||||    
T  20489181 ccataaaccagcctctcaatcaactgctttgcacatgcatatgaccatctctgcttttcgattgaaccgaaaatgcatggaga 20489263  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 19389574 - 19389507
Alignment:
Q  28 tcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaat 95  Q
    |||||||||||||| || ||| ||||||| |||||||| ||||||||||| ||| |||||||||||||    
T  19389574 tcacttggaccatccactccaggaatgaagtccattcttggtccaatccagttataaggtctcacaat 19389507  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 20488984 - 20489087
Alignment:
Q  19 ggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttcat 118  Q
    ||||| ||||||||||| || |||| |||  ||||||| |||||||| ||||| ||||||||||| || ||||||||||| || ||||| || ||||||     
T  20488984 ggaacaccctcacttggtccgtcaataccgggaatgaagtccattctaggtccgatccaattaaagggcctcacaattgtgaactccaagccgttttcag 20489083  T
Q  119 cacc 122  Q
    ||||    
T  20489084 cacc 20489087  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 15558391 - 15558471
Alignment:
Q  104 ccaacccattttcatcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgctttt 184  Q
    |||||| ||||||  ||||||| || ||||| ||||||||| |||| ||||| ||||||| ||| ||||||||||||||||    
T  15558391 ccaacctattttccgcaccttcaccgtaaataaacctctcattcaactgctttgcacatgtatacgaccatctttgctttt 15558471  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 15565604 - 15565707
Alignment:
Q  97 gtaaattccaacccattttcatcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactga 196  Q
    ||||| ||||||| ||||||| |||||||  | ||||||||||| |||||||| || |  ||||||| ||| |||||||| |||||| ||||| ||| ||    
T  15565604 gtaaactccaacctattttcagcaccttcatcgtaaatcaacctttcaatcaactgatatgcacatggatacgaccatctctgctttacgatcagaccga 15565703  T
Q  197 aaat 200  Q
    ||||    
T  15565704 aaat 15565707  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 15578251 - 15578354
Alignment:
Q  97 gtaaattccaacccattttcatcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactga 196  Q
    ||||| ||||||| ||||||| |||||||  | ||||||||||| |||||||| || |  ||||||| ||| |||||||| |||||| ||||| ||| ||    
T  15578251 gtaaactccaacctattttcagcaccttcatcgtaaatcaacctttcaatcaactgatatgcacatggatacgaccatctctgctttacgatcagaccga 15578350  T
Q  197 aaat 200  Q
    ||||    
T  15578351 aaat 15578354  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 15538627 - 15538514
Alignment:
Q  98 taaattccaacccattttcatcaccttctccataaatcaacctctcaatcaattgcttagcacatgcatatgaccatctttgcttttcgatcggactgaa 197  Q
    |||| ||||||| ||||||| ||||||| || ||| ||||||  |||||||| || |  ||||||||||| ||| |||| ||||||  |||| ||| |||    
T  15538627 taaaatccaacctattttcaacaccttcaccgtaa-tcaacccttcaatcaactgatatgcacatgcatacgacgatctctgctttaagatcagaccgaa 15538529  T
Q  198 aatgcacggagattc 212  Q
    |||||| ||||||||    
T  15538528 aatgcatggagattc 15538514  T

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