View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19507_low_43 (Length: 224)

Name: NF19507_low_43
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19507_low_43
NF19507_low_43
[»] chr6 (2 HSPs)
chr6 (1-178)||(636721-636898)
chr6 (188-224)||(636627-636663)
[»] chr8 (6 HSPs)
chr8 (4-192)||(44453814-44454008)
chr8 (4-78)||(44464507-44464581)
chr8 (4-78)||(44472038-44472112)
chr8 (189-224)||(44454043-44454078)
chr8 (94-174)||(44472115-44472194)
chr8 (188-224)||(44472250-44472286)
[»] chr1 (1 HSPs)
chr1 (8-112)||(11574493-11574604)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 636898 - 636721
Alignment:
Q  1 tctagctgaagccactcttcggagaatccatattgctcagaaggatgatgaaatgcctcctatagaagccattctagccaggcttaactcaagcttgctc 100  Q
    ||||||||||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  636898 tctagctgaagccactcttcgaagagtccatgctgctcagaaggatgatgaaatgcctcctatagaagccattctagccaggcttaactcaagcttgctc 636799  T
Q  101 ggcaagaggtatgtattgccttatatttttctattttgaagggtagtttctgtctaaaagtaccagttaaagggcact 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  636798 ggcaagaggtatgtattgccttatatttttctattttgaagggtagtttctgtctaaaagtactggttaaagggcact 636721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 636663 - 636627
Alignment:
Q  188 ttgtttcttgcagattgctaaacttcaagatgataac 224  Q
    |||||||||||||||||||||||||||||||||||||    
T  636663 ttgtttcttgcagattgctaaacttcaagatgataac 636627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 44453814 - 44454008
Alignment:
Q  4 agctgaagccactcttcggagaatccatattgctcagaaggatgatgaaatgcctcctatagaagccattctagcc-------aggcttaactcaagctt 96  Q
    ||||||||| |||||||| ||  |||||  |||||||||||||||||| ||||||||||||||||||||||||||        ||||| |||||||||||    
T  44453814 agctgaagctactcttcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagctt 44453913  T
Q  97 gctcggcaagaggtatgtattgccttatatttttctattttgaagggtagtttctgtctaaaagtaccagttaaagggcactgagggtggcttgtt 192  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| | ||| |||  ||||||||||||||||| |||||||||    
T  44453914 gctcggcaagaggtatttattgccttat-tttttctattttgaatggtagtttctgtgtgaaaatactggttaaagggcactgaggttggcttgtt 44454008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 44464507 - 44464581
Alignment:
Q  4 agctgaagccactcttcggagaatccatattgctcagaaggatgatgaaatgcctcctatagaagccattctagc 78  Q
    ||||||||| |||||||| ||  |||||  |||||| ||||||||||| |||||||||||||| |||||||||||    
T  44464507 agctgaagctactcttcgaagggtccatgctgctcaaaaggatgatgacatgcctcctatagaggccattctagc 44464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 44472038 - 44472112
Alignment:
Q  4 agctgaagccactcttcggagaatccatattgctcagaaggatgatgaaatgcctcctatagaagccattctagc 78  Q
    ||||||||| |||||||| ||  |||||  |||||| ||||||||||| ||||||||||||||  ||||||||||    
T  44472038 agctgaagctactcttcgaagggtccatgctgctcaaaaggatgatgacatgcctcctatagagtccattctagc 44472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 44454043 - 44454078
Alignment:
Q  189 tgtttcttgcagattgctaaacttcaagatgataac 224  Q
    |||||||||||||| |||||||||||||||||||||    
T  44454043 tgtttcttgcagatagctaaacttcaagatgataac 44454078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 44472115 - 44472194
Alignment:
Q  94 cttgctcggcaagaggtatgtattgccttatatttttctattttgaagggtagtttctgtctaaaagtaccagttaaaggg 174  Q
    ||||||| |||||||| |||||||||||| | ||||| || |||||| ||||||| |||| | ||| |||| |||||||||    
T  44472115 cttgctctgcaagaggcatgtattgccttgt-tttttttactttgaatggtagttcctgtgttaaaataccggttaaaggg 44472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 44472250 - 44472286
Alignment:
Q  188 ttgtttcttgcagattgctaaacttcaagatgataac 224  Q
    ||||||||| || ||||||||||||||||||||||||    
T  44472250 ttgtttctttcaaattgctaaacttcaagatgataac 44472286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 11574493 - 11574604
Alignment:
Q  8 gaagccactcttcggagaatccatattgctcagaaggatgatgaaatgcctcctatagaagccattctagc-------caggcttaactcaagcttgctc 100  Q
    ||||| |||||||||||  |||||  |||||||||||||||||| |||||||| || ||||| ||||| ||        ||||| |||| ||||||||||    
T  11574493 gaagctactcttcggagggtccatgctgctcagaaggatgatgacatgcctccgatcgaagcaattcttgctcctttggaggctgaactaaagcttgctc 11574592  T
Q  101 ggcaagaggtat 112  Q
    ||||||||||||    
T  11574593 ggcaagaggtat 11574604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University