View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_44 (Length: 205)
Name: NF19507_low_44
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_44 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37377407 - 37377611
Alignment:
| Q |
1 |
cagcatagtcattttctcaaattttgcaccacaattttaaaggttatatacttggttatccctagctaggcaacaaaataggccttggccaattcattat |
100 |
Q |
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| T |
37377407 |
cagcatagtcattttctcaaattttgcaccacaattttaaaggttatatacttgtttatccctagctaggcaacaaaataggccttggccaattcattat |
37377506 |
T |
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| Q |
101 |
ttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaacagattcgggagctactctccaatgggaccatggtaaatagttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
37377507 |
ttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaacagatttgggagctacactccaatgggaccatggtaaatagttac |
37377606 |
T |
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| Q |
201 |
tcagg |
205 |
Q |
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||||| |
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| T |
37377607 |
tcagg |
37377611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 37384827 - 37385023
Alignment:
| Q |
5 |
atagtcattttctcaaattttgcaccacaattttaaaggttatatacttggttatccctagctag--gcaa--caaaataggccttggccaattcattat |
100 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| || | ||||||| ||||||||||||| |
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| T |
37384827 |
atagtccttttctcaaattttgcaccacatttttaaaggttatatgtttgtttatccctagctagtagctagacaaaatatgccttggccaatt------ |
37384920 |
T |
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| Q |
101 |
ttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaacagattcgggagctactctccaatgggaccatggtaaatagttac |
200 |
Q |
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| T |
37384921 |
-tgtattactgatatttgtggattcaactggaa-gatgatcaattctgtttttaacagatttgggagctaaactccaatgggaccctggtaaacagttac |
37385018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 32462588 - 32462636
Alignment:
| Q |
6 |
tagtcattttctcaaattttgcaccacaattttaaaggttatatacttg |
54 |
Q |
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|||||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
32462588 |
tagtcattttttcaaatttaacaccacaattttaaaggttctatacttg |
32462636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 29692320 - 29692365
Alignment:
| Q |
5 |
atagtcattttctcaaattttgcaccacaattttaaaggttatata |
50 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
29692320 |
atagtcattttctcaaatttaacaccacaattttaaatgttctata |
29692365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 25730076 - 25730121
Alignment:
| Q |
5 |
atagtcattttctcaaattttgcaccacaattttaaaggttatata |
50 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
25730076 |
atagtcattttctcaaatttaacaccacaattttaaatgttctata |
25730121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 13595833 - 13595878
Alignment:
| Q |
5 |
atagtcattttctcaaattttgcaccacaattttaaaggttatata |
50 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
13595833 |
atagtcattttctcaaatttaacaccacaattttaaatgttctata |
13595878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 22916301 - 22916346
Alignment:
| Q |
5 |
atagtcattttctcaaattttgcaccacaattttaaaggttatata |
50 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
22916301 |
atagtcattttctcaaatttaacaccacaattttaaatgttctata |
22916346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 17500908 - 17500949
Alignment:
| Q |
9 |
tcattttctcaaattttgcaccacaattttaaaggttatata |
50 |
Q |
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||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
17500908 |
tcattttcttaaattttgtaccacaattttaaatgttatata |
17500949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 41227909 - 41227856
Alignment:
| Q |
149 |
tctttaacagattcgggagctactctccaatgggaccatggtaaatagttactc |
202 |
Q |
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| T |
41227909 |
tctttgacagatttgggagctaaactccaatggaaccctggtaaatagttactc |
41227856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 5904551 - 5904511
Alignment:
| Q |
9 |
tcattttctcaaattttgcaccacaattttaaaggttatat |
49 |
Q |
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||||||||||||| ||| |||||||||||||||||||||| |
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| T |
5904551 |
tcattttctcaaaatttaaaccacaattttaaaggttatat |
5904511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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