View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_low_5 (Length: 532)
Name: NF19507_low_5
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 79 - 522
Target Start/End: Complemental strand, 10597235 - 10596792
Alignment:
| Q |
79 |
tctggagtaaaatttgttagctaacacatacctgtaaagtatctaacttcagcaacagtctcattatagtttctccaatagcaattttttgcttgttatc |
178 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
10597235 |
tctggagtaaagcttgttcgctcccacatacctgtatagtatctaacttcagcaacagtctcattatagtttcaccaattgcaattttttgcttgttatc |
10597136 |
T |
|
| Q |
179 |
attttgaaaatcagaatgaccttcaaaagcttgaacacgttccctaacatcggtcacctccttactgacttcacctatctgccttaatttcttcaaaggc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10597135 |
attttgaaaatcagaatgaccttcaaaagcttgaacatgtgccctaacatcggtcacctccttactgacttcacctatctgcctcaatttctttaaaggc |
10597036 |
T |
|
| Q |
279 |
tcccattttcttactagataaccgcgataaacagcttgtatcaaaacagcagcatctgcatccgacagaactcgtcttccacttttaccagcttcattgg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
10597035 |
tcccattttcttactagataaccgcgataaacagcttgtatcaaaacagcagcatctgcatccgacagaactcgtcttccacttttaccaccttcattag |
10596936 |
T |
|
| Q |
379 |
ttgttgtatttctatcctttacagaatgctctgaagagtctcgcgtcttattttccgtgcctttctctttattcttatcatttgtcttattttggcacac |
478 |
Q |
| |
|
||||||| |||||||| | | ||| || |||||||| || | || ||||||||| |||||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
10596935 |
ttgttgtgtttctatcttctgtagagtgttctgaagactcccctgtaatattttccgcccctttctcttccttcttatcatttgtcttgttttggcacgc |
10596836 |
T |
|
| Q |
479 |
ttgaatagttttcacctctggtgttaactctttactagcctttg |
522 |
Q |
| |
|
|||| ||||||||| |||||||| | ||| | ||||||||||| |
|
|
| T |
10596835 |
ttgagtagttttcatctctggtgcaacctcctcactagcctttg |
10596792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University