View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19507_low_6 (Length: 496)
Name: NF19507_low_6
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 246 - 474
Target Start/End: Original strand, 23699591 - 23699820
Alignment:
| Q |
246 |
ttcatcctcacatcttcagcataatcgttttcattgcaatcgctccactcaaattcttcatcgcatatgaattctattctaacggctctgagat-gaatt |
344 |
Q |
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| T |
23699591 |
ttcatcctcaaatcttcatcagaatcgttttcatttccatcgctctgctcaatttcttcattgcagacgaattccactctaccggctctgagatcgaatt |
23699690 |
T |
|
| Q |
345 |
tgtatctccactgatttctctacgcgaatttgtgaatctcttctcctgtatccatctcttgcgaatcgttatgtacatgtggttagtagttcctttgggt |
444 |
Q |
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| T |
23699691 |
tgtatctctactgatttctgtacacgaatttgcgaatctcttctcgtgtatccatctcttgtgaatcgttacgtacatgtggttagtagttcctttgggt |
23699790 |
T |
|
| Q |
445 |
atctattttgcaatatctacaatgttaagg |
474 |
Q |
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| T |
23699791 |
atctattttgagatatctacaatggtaagg |
23699820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36823718 - 36823850
Alignment:
| Q |
1 |
taaatcgattagttcaaaatgaaaactagcttaggctgccctctcctccttatgtgaatgttaaaagaaatgacaacaatatatacccttgaggtcttgg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
36823718 |
taaatcgattagttcaaaatgaaaaccagcttaggctgccctctcctccttctgtgaatgttaaaagaaatgacaacaatatatactcttgaggtctagg |
36823817 |
T |
|
| Q |
101 |
tagaactcctctcggtcaaataactacattaat |
133 |
Q |
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| T |
36823818 |
tagaactcctctcggtcaaataactacgttaat |
36823850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 478
Target Start/End: Complemental strand, 18203480 - 18203246
Alignment:
| Q |
246 |
ttcatcctcacatcttcagcataatcgtttt-cattgcaatcgctccactcaaattcttcatcgcatatgaattctattctaacggctctgagatg-aat |
343 |
Q |
| |
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|||| ||||||||||||| ||||| |||||| |||| | |||| | |||||||||||||| || ||||||| |||| || |||| ||||||| ||| |
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| T |
18203480 |
ttcaccctcacatcttcatcataaacgtttttcattaccatcgtacttatcaaattcttcatcacaattgaattccattcaaatggctttgagatggaat |
18203381 |
T |
|
| Q |
344 |
ttgtatctccactgatttctctacgcgaatttgtgaatctct-tctcctgtatccatctcttgcgaatcgttatgtacatgtggttagtagttcctttgg |
442 |
Q |
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||||||||| | ||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||| || ||||||| ||||||||||||| |
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| T |
18203380 |
ttgtatctctattgatttctccacacgaatttgtgaatctcaatctcctgtatccatctctcgcgaatcgttca-tatatgtggtatgtagttcctttgg |
18203282 |
T |
|
| Q |
443 |
gtatctattttgcaatatctacaatgttaagggttt |
478 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||| |
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| T |
18203281 |
gtatctattttgcaatagctacaatgtttagggttt |
18203246 |
T |
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