View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19508_low_2 (Length: 533)
Name: NF19508_low_2
Description: NF19508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19508_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 30921756 - 30921523
Alignment:
| Q |
15 |
caaaggtaggtcaaagacaacaatgttgatattaattggacagagtcagagtccacgatagacaaatccacagtaggcatgaagtcccacattgccaaaa |
114 |
Q |
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| T |
30921756 |
caaaggtaggtcaaagacaacaatgttgatattaattggacagagtcagagtccacgatagacaaatccacagtaggcatgaagtcccacattgccaaaa |
30921657 |
T |
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| Q |
115 |
ttttcgaacattttttggctttgagataatcaatagcttcttccaacctctctcccttgcaaagaacttctatcaagctagtacttgtgaatgggttttt |
214 |
Q |
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| T |
30921656 |
ttttcgaacattttttggctttgagataatcaatagcttcttccaacctctctcccttgcaaagaacttctatcaagctagtacttgtgaatgggttttt |
30921557 |
T |
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| Q |
215 |
cttcgtctaatttaaggaaaatgaaacatgatag |
248 |
Q |
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| T |
30921556 |
cttcgtctaatgtaaggaaaatgaaacatgatag |
30921523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 399 - 517
Target Start/End: Complemental strand, 30921329 - 30921213
Alignment:
| Q |
399 |
agtgatcaaatattaagaaaccaagcatgacannnnnnngtaattgtgttgctcttacataaaagacctacacctattatcttattaactaaggcaaagc |
498 |
Q |
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| T |
30921329 |
agtgatcaaatattaagaaaccaatcatgacatttttttgtaactgt--tgctcttacataaaagacttacacctattatcttattaactaaggcaaagc |
30921232 |
T |
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| Q |
499 |
taaagagaccaatacatgt |
517 |
Q |
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| T |
30921231 |
taaagagaccaatacatgt |
30921213 |
T |
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