View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19508_low_3 (Length: 335)
Name: NF19508_low_3
Description: NF19508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19508_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 41351101 - 41350793
Alignment:
| Q |
12 |
atgaagatgaaatatggttagatatgttaacaaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattca |
111 |
Q |
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| T |
41351101 |
atgaagatgaaaaatggttagatatgttaacaaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattca |
41351002 |
T |
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| Q |
112 |
cgaatgcaatcaagagacccccctctagcagctagatgaagtggagtacttccagggtagctgcaaatagcaattcattagtccacaaaacaaatagaat |
211 |
Q |
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| T |
41351001 |
cgaatgcaatcaagagacccccctctagcagctagatgaagtggagtacttccaggatagctgcaaatagcaattcattagtccacaaaacaaatagaat |
41350902 |
T |
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| Q |
212 |
gcataagaatcaagtcactaaccatagaatattgagagatcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatgc |
311 |
Q |
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| T |
41350901 |
gcataagaatcaagtcactaaccatagaatattgagagatcaatacccgtatctaccggtcgaagcacaaacaagagctccgctatctaatagaatatgc |
41350802 |
T |
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| Q |
312 |
acacattca |
320 |
Q |
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| T |
41350801 |
acacattca |
41350793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 23713337 - 23713237
Alignment:
| Q |
61 |
tacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaagagacccccctctagcagctagatgaagtggagtac |
160 |
Q |
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| T |
23713337 |
tacccagatgcatcacgttggagacgatctgcaccccatgctaataattcgcggatgcaatcgagagatcctcctttagctgctagatgaagtggagtac |
23713238 |
T |
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| Q |
161 |
t |
161 |
Q |
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| T |
23713237 |
t |
23713237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 23713141 - 23713064
Alignment:
| Q |
243 |
ttgagagatcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatgcacacattca |
320 |
Q |
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|||| |||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
23713141 |
ttgaaagatcaatacccatatctgctagttgaagcacaaacaagagctccactacacaatagaatgtgcacacattca |
23713064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 7346840 - 7346874
Alignment:
| Q |
255 |
tacccgtatctaccggttgaagcacaaacaagagc |
289 |
Q |
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| T |
7346840 |
tacccgtatccaccggttgaagcacaaacaagagc |
7346874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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