View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19508_low_4 (Length: 280)
Name: NF19508_low_4
Description: NF19508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19508_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 270
Target Start/End: Original strand, 43054651 - 43054931
Alignment:
| Q |
3 |
tgtcataagataacttcactctcatcttcacattcgttcaactctctcttaattaatagataggaaaaattgagcagactcgttcaatggatcgttgttg |
102 |
Q |
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| T |
43054651 |
tgtcataagataacttcactctcatcttcacattcgttcaactctctcttaattaatagataggaaaaattgagtagactcgttcaatggatcgttgttg |
43054750 |
T |
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| Q |
103 |
cagttgcaac-------------atcgatatagaatgatgttgaaaaaattattcgcccaacataactttgtcgttggtggtttgtcaagagtcgtctac |
189 |
Q |
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| T |
43054751 |
cagttgcaacatcacagatcaacatcgatatagaatgatgttgaaaaaattattcgcccaacataactttgtcgttggtggtttgtcaagagtcgtctac |
43054850 |
T |
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| Q |
190 |
ttataacaagttaggtttggtctagacttatcaatcgaacaattatcaatcgattttcatctcattactgcattgatgatg |
270 |
Q |
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| T |
43054851 |
ttataacaagttaggtttggtctagacttatcaatcgaacaattatcaatcgattttcatctcattactgcattgatgatg |
43054931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 43030329 - 43030212
Alignment:
| Q |
3 |
tgtcataagataacttcactctcatcttcacattcgttcaactctctcttaatta----atagataggaaaaattgagca-gactcgttcaatggatcgt |
97 |
Q |
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| T |
43030329 |
tgtcataagataacttcactctcatcttcacattcgttcaactctctcttaattagtagatagataggacaaattaagcagggctcgatcaatgtatcgt |
43030230 |
T |
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| Q |
98 |
tgttgcagttgcaacatc |
115 |
Q |
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| T |
43030229 |
tgttgtagttgcaacatc |
43030212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 43030197 - 43030139
Alignment:
| Q |
117 |
atatagaatgatgttgaaaaaattattcgcccaa--cataactttgtcgttggtggttt |
173 |
Q |
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| T |
43030197 |
atatagaatgatgttgaaaaaattattagcccaaggcgtaactttctcgatggtggttt |
43030139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 43029532 - 43029452
Alignment:
| Q |
177 |
aagagtcgtctactta-taacaagttaggtttggtctagacttatcaatcgaacaattatcaatcgattttcatctcatta |
256 |
Q |
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| T |
43029532 |
aagagtcgtcaacttaataacgagttgggatctgtctagacttatcaactgaacaattatcaatcaatgtttatctcatta |
43029452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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