View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_high_3 (Length: 428)
Name: NF19509_high_3
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_high_3 |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 40782277 - 40781888
Alignment:
| Q |
19 |
atgaggtatcatttcagagacgatatataatatttatgtctggactctggattgaacagactctggtgagatggatcatggctagggaagagaaatcaca |
118 |
Q |
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| T |
40782277 |
atgaggtatcatttcagaaacgatatataatatttatgtctgga-------ttgaacagactctggtgagatggatcatggctagggaagagaaatcaca |
40782185 |
T |
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| Q |
119 |
ttgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttannnnnnnncataaataggtgggggacaattagtagatgg |
218 |
Q |
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| T |
40782184 |
ttgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttattttttt-cataaataggtggggggcaattagtagatgg |
40782086 |
T |
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| Q |
219 |
caactgcacccttattctgtataaggcccaacatgtacttagcgagctaggccacatcatttgatgtaggtactttcgttttcccctatgcagtttggat |
318 |
Q |
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| T |
40782085 |
caactgcccccttgttctgtataaggcccaacatgtacttggcgagctaggccatatcatttgatgtaggtaccttcgtttttccctatgcagttcggat |
40781986 |
T |
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| Q |
319 |
tataaatgatactaagcgaatctcattaannnnnnnnatctatctcctaataaatgnnnnnnnntaatatctgaactcatggacataacaacaccctatg |
418 |
Q |
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| T |
40781985 |
tataaatgataccaagcggatcccattaattttttttatctatctcctaataaatgaaaaaaa--aatatctgaactcacggacataacaacaccctatg |
40781888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 10323 - 10000
Alignment:
| Q |
19 |
atgaggtatcatttcagagacgatatataatatttatgtctggactctggattgaacagactctggtgagatggatcatggctagggaagagaaatcaca |
118 |
Q |
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| T |
10323 |
atgaggtatcatttcagaaacgatatataatatttatgtctgga-------ttgaacagactctggtgagatggatcatggctagggaagagaaatcaca |
10231 |
T |
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| Q |
119 |
ttgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttannnnnnnncataaataggt-gggggacaattagtagatg |
217 |
Q |
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| T |
10230 |
ttgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttattttttttcataaataggtgggggggcaattagtagatg |
10131 |
T |
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| Q |
218 |
gcaactgcacccttattctgtataaggcccaacatgtacttagcgagctaggccacatcatttgatgtaggta-ctttcg---ttttcccctatgcagtt |
313 |
Q |
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| T |
10130 |
gcaactgcccccttgttctgtataaggcccaacatgtacttggcgagctaggccatatcatttgatgtaggtacctttcgtttttttcccttatgcagtt |
10031 |
T |
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| Q |
314 |
tggattataaatgatactaagcgaatctcatt |
345 |
Q |
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| T |
10030 |
cggattat-aatgataccaagcggatcccatt |
10000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 9958 - 9924
Alignment:
| Q |
384 |
aatatctgaactcatggacataacaacaccctatg |
418 |
Q |
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| T |
9958 |
aatatctgaactcacggacataacaacaccctatg |
9924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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