View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_high_4 (Length: 390)
Name: NF19509_high_4
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 12583812 - 12584194
Alignment:
| Q |
1 |
taaaattattttacacatacatccactaatgtagcaacacataagtttnnnnnnncataaattggagacaaatcttttgatacatgtgtaaataatttta |
100 |
Q |
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| T |
12583812 |
taaaattattttgcacatacatccactaatgtagcaacacataagttttaaaaaacataaattggagacaaatcttttgatacatgtgtaaataatttta |
12583911 |
T |
|
| Q |
101 |
tacagtcagtgtaaatccaagttaaactcattagttaaatccaagttattatgatcattaactactattaatggaactattattaaaacataagatgaat |
200 |
Q |
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| T |
12583912 |
tacagtcagtggaaatccaagttaaactcattagttaaatccaagttattatgatcattaactactattaatggaactattattaaaacataagatgaat |
12584011 |
T |
|
| Q |
201 |
gtataatattaatacctatcatcaggatcaacatgaattgcttgatcaaagtaagatttagctctttcttcatctctactcatttcccatatcaactttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12584012 |
gtataatattaatacctatcatcaggatcaacatgaattgcttgatcaaagtaagatttagctctttcttcatctctactcatttcccatatcaactttc |
12584111 |
T |
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| Q |
301 |
cgtaaagcgaaagcaattccgcatcttcaggattcgctagaatcgctcttccgtagtattcctctgctctcaccatattcttc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12584112 |
cgtaaagcgaaagcaattccgcatcttcaggattcgctagaatcgctcttccgtagtattcctctgctctcaccatattcttc |
12584194 |
T |
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