View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_high_7 (Length: 278)
Name: NF19509_high_7
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7661988 - 7662251
Alignment:
| Q |
1 |
aaaaccataagaaaatgggatacatagttgcgtcaacccgatgaattaattgaatattttaacacaaaacaactcaatacatagacttaaaaattgtaaa |
100 |
Q |
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| T |
7661988 |
aaaaccataagaaaatgggatacatagttgcgtcaacccgatgaattaattgaatattttaacacaaaacaactcaatacatagacttaaaaattgtaaa |
7662087 |
T |
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| Q |
101 |
ttaaactacttaggtgtgtatgtgg--nnnnnnnnnacattaagttttagttatagtttgactttaaattattgatgttaaagaatatatattatcattg |
198 |
Q |
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| T |
7662088 |
ttaaactacttaggtgtgtatgtggtttttttttttacattaagttttagttatagtttgactttaaattattgatgttaaagaatatatattatcattg |
7662187 |
T |
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| Q |
199 |
catataagtgaaaaattgtgatatagtttgttgatcatttctttaatttcatctcggttttttattcatctc |
270 |
Q |
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| T |
7662188 |
cttataagtgaaaaattttgatatagttt--------tttctttaatttcatctcgtttttttattcatctc |
7662251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 7622200 - 7621938
Alignment:
| Q |
1 |
aaaaccataagaaaatgggatacatagttgcgtcaacccgatgaattaattgaatattttaacacaaaacaactcaatacatagacttaaaaattgtaaa |
100 |
Q |
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| T |
7622200 |
aaaaccataagaaaatgggatacatagttgcgtcaacccgatgaattaattaaatattttaacacaaaacaactcaatacatagacttaaaaattgtaaa |
7622101 |
T |
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| Q |
101 |
ttaaactacttaggtgtgtatgtgg--nnnnnnnnnacattaagttttagttatagtttgactttaaattattgatgttaaagaatatatattatcattg |
198 |
Q |
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| T |
7622100 |
ttaaactacttaggtgtgtatgtggtttttttttttacattaagttttagttatagtttgactttaaattattgatgttaaagaatatatattatcatag |
7622001 |
T |
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| Q |
199 |
catataagtgaaaaattgtgatatagtttgttgatcatttctttaatttcatctcggttttttattcatctc |
270 |
Q |
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| T |
7622000 |
cttataagtgaaaaattttgatatagttt--------tttctttaatttcatctc-tttttttattcatctc |
7621938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7660651 - 7660719
Alignment:
| Q |
1 |
aaaaccataagaaaatgggatacatagttgcgtcaacccgatgaattaattgaatattttaacacaaaa |
69 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
7660651 |
aaaatcataagaaaatgggatacataattgcgtcaacccgacgaattaattgaatatttttacacaaaa |
7660719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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