View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_high_8 (Length: 247)
Name: NF19509_high_8
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 7662903 - 7662685
Alignment:
| Q |
17 |
agttagtaggtgttagaatttaatagtgttgtatatccattttgctatcttgttttttaagaggttccaaactttttgagtttgagaaaagtgtgtttgg |
116 |
Q |
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| T |
7662903 |
agttagtgggtgttagaatttaatagtgttgtatatccattttgctatcttgttttttgagaggttccaaactttttgagtttgagaaaagggcttt--g |
7662806 |
T |
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| Q |
117 |
agttatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaa |
216 |
Q |
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| T |
7662805 |
aattatagaagagtaggtaacttaccaaaagtagtgctttaatttcaatataagtgagtttgtttccatcaacatccgtttcttctttaagtaacaacaa |
7662706 |
T |
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| Q |
217 |
agtactcaacaaatccctatg |
237 |
Q |
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| T |
7662705 |
agtactcaacaaatccttatg |
7662685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 7621387 - 7621505
Alignment:
| Q |
119 |
ttatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaaag |
218 |
Q |
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| T |
7621387 |
ttatagaagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaaag |
7621486 |
T |
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| Q |
219 |
tactcaacaaatccctatg |
237 |
Q |
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| T |
7621487 |
tactcaacaaatccttatg |
7621505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 7667897 - 7667812
Alignment:
| Q |
128 |
agtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaa |
213 |
Q |
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| T |
7667897 |
agtagataacttatcaaaagtagtgctttgatttcaatataagtgagtttgtttccatcatcatccgtttcctctttaagtaacaa |
7667812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 7682303 - 7682191
Alignment:
| Q |
125 |
aagagtaggtaacttaccaaaagtagtgctttgatttcaatataagtgagtttgtttccatcaacatctgtttcctctttaagtaacaacaaagtactca |
224 |
Q |
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| T |
7682303 |
aagagtatgtaacataccataagtagtcctctgatctcaatatcagtgagttgatttccatcctcatatgtttcctctttaagtgacaacaaagtactca |
7682204 |
T |
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| Q |
225 |
acaaatccctatg |
237 |
Q |
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| T |
7682203 |
acaaatccttatg |
7682191 |
T |
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