View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_low_1 (Length: 596)
Name: NF19509_low_1
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 15217452 - 15216857
Alignment:
| Q |
1 |
ataaatacacaaagaggatcaacaccttatatgtcaagccattgtcgaagaagatgtcagatgctgtcaaaatagggataaaccaaaaataaatgttccg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217452 |
ataaatacacaaagaggatcaacacctaatatgtcaagccattgtcgaagaagatgtcagatgctgtcaaaatagggataaaccaaaaataaatgttccg |
15217353 |
T |
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| Q |
101 |
ctgattccaccaaaccacacctaaacatacaaagatgagtgtcccgatgaaggatgtctcaccgaaataaattattcttagctggaattcggttacgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15217352 |
ctgattccaccaaaccacacctaaacatacaaagatgagtgtcctgatgaaggatgtctcaccgaaataaattattcttagctggaattcggtaacgaag |
15217253 |
T |
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| Q |
201 |
aagacactgaacaaataaggatactttcaaaggaacttccttatgccaaataatatcattcaaacggctcctcctcaccataacgcgccactaagacttt |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217252 |
aagacgctgaacaaataaggatactttcaaaggaacttctttatgccaaataatatcattcaaacggctcctcctcaccataacgcgccactaagacttt |
15217153 |
T |
|
| Q |
301 |
ataccataaaatccctctatcaacatgcatccttcaacaccaattacctaataaatcaaaattaaacttcctcatcttcccttattcaccataacgtgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15217152 |
ataccataaaatccctctatcaacatgcatccttcaacaccaattacctaataaatcaaaattaaacttcctcatcttcccttattcaccataacgcacc |
15217053 |
T |
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| Q |
401 |
actaaccctcctcactgaacccttcctcacataacgcgccactaaccctaaccatactgacccttcactcccttcatcattcaaccgacccctcctcact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15217052 |
actaaccctcctcactgaacccttcctcacataacgcgccactaaccctaaccatactgacccttcactcccttcatcattcaaccaacccctcctcacc |
15216953 |
T |
|
| Q |
501 |
ataacacaccactaaaactttatacttaaaatacctttatctacatgcattctccaacaccaattacatagtaaagcaaagttaaacttcctcatc |
596 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15216952 |
ataatgcaccactaaaactttatacttaaaatccctttatctacatgcattctccaacaccaattacatagtaaagcaaagttaaacttcctcatc |
15216857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 9608938 - 9608981
Alignment:
| Q |
210 |
aacaaataaggatactttcaaaggaacttccttatgccaaataa |
253 |
Q |
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||||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
9608938 |
aacaaataaagatattttcaaaggaacttccttatgtcaaataa |
9608981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 21499334 - 21499374
Alignment:
| Q |
269 |
tcctcctcaccataacgcgccactaagactttataccataa |
309 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||| |
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| T |
21499334 |
tcctcctcaccatacctcgcaactaagactttataccataa |
21499374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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