View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_low_10 (Length: 247)
Name: NF19509_low_10
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 42334629 - 42334804
Alignment:
| Q |
11 |
atgaaaaatcaagactgttaccttaaaactaaaaaaggaaataaagacatgaaagtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaa |
110 |
Q |
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| T |
42334629 |
atgaaaaatcaagactgttaccttaaaactaaaaaaggaaataaagatatgaaagtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaa |
42334728 |
T |
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| Q |
111 |
gaagaagcttgttgtgattgaataatgaacaaaataaagacagacacaacgtcaaatataactaattaactaacag |
186 |
Q |
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| T |
42334729 |
gaagaagcttgttgtgattgaataatgaacaaaataaagacagacacaacgtcaaatataactaattaactaacag |
42334804 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 42334819 - 42334870
Alignment:
| Q |
177 |
taactaacagctaacaagttgtaacaccacctccctcaagatagaatgtggatat |
231 |
Q |
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| T |
42334819 |
taactaacagctaacaagttgtaa---cacctccctcaagatagaatgtggatat |
42334870 |
T |
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