View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19509_low_2 (Length: 543)

Name: NF19509_low_2
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19509_low_2
NF19509_low_2
[»] chr7 (6 HSPs)
chr7 (407-524)||(25872968-25873085)
chr7 (220-315)||(25872715-25872810)
chr7 (44-154)||(25872544-25872649)
chr7 (44-113)||(25864041-25864109)
chr7 (53-81)||(25855467-25855495)
chr7 (222-254)||(25864234-25864266)
[»] chr6 (2 HSPs)
chr6 (48-104)||(17251619-17251674)
chr6 (267-311)||(21000691-21000735)
[»] scaffold0032 (1 HSPs)
scaffold0032 (267-315)||(56480-56528)
[»] chr3 (3 HSPs)
chr3 (267-315)||(42392886-42392934)
chr3 (266-315)||(35461560-35461609)
chr3 (267-311)||(4601424-4601468)
[»] chr8 (3 HSPs)
chr8 (268-315)||(70604-70651)
chr8 (268-311)||(4531067-4531110)
chr8 (267-311)||(12534803-12534847)
[»] chr5 (1 HSPs)
chr5 (268-315)||(35317778-35317825)
[»] chr4 (4 HSPs)
chr4 (260-311)||(26424942-26424993)
chr4 (268-315)||(53457824-53457871)
chr4 (266-311)||(19849588-19849633)
chr4 (267-311)||(34739279-34739323)
[»] chr2 (3 HSPs)
chr2 (268-315)||(11459715-11459762)
chr2 (268-315)||(34234530-34234577)
chr2 (268-315)||(42578180-42578227)
[»] chr1 (3 HSPs)
chr1 (264-311)||(32007070-32007117)
chr1 (267-311)||(28455873-28455917)
chr1 (267-311)||(29994468-29994512)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 407 - 524
Target Start/End: Original strand, 25872968 - 25873085
Alignment:
Q  407 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaacctttactaatcgaat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25872968 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaacctttactaatcgaat 25873067  T
Q  507 tggtttctatgcgatcag 524  Q
    ||||||||||| ||||||    
T  25873068 tggtttctatgtgatcag 25873085  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 25872715 - 25872810
Alignment:
Q  220 tcattttactaatttgcattatttgttgacataaattaacaaattcgagtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||    
T  25872715 tcattttactaatttgcattatttgttgacataaattaacaaattcgagtctagaagtcctaactcaattggcaaatgccgatattacaaggtcgg 25872810  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 25872544 - 25872649
Alignment:
Q  44 actctaaatattaattaaattttataatttgaacataaacaaagttaacttaaggtaaaaccgtgaaaaaagacatatacaatcaatcaaagtagtcaag 143  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||    |||||||||||||||||    
T  25872544 actctaaatattaattaaattttatgatttgaacataa-caaagttaactaaagataaaaccgtgaaaaaggacatata----caatcaaagtagtcaag 25872638  T
Q  144 acaaaagcgct 154  Q
    | |||||||||    
T  25872639 ataaaagcgct 25872649  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 25864041 - 25864109
Alignment:
Q  44 actctaaatattaattaaattttataatttgaacataaacaaagttaacttaaggtaaaaccgtgaaaaa 113  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  25864041 actctaaatattaactaaattttaaaatttgaacat-aacaaagttgactaaaggtaaaaccgagaaaaa 25864109  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 25855467 - 25855495
Alignment:
Q  53 attaattaaattttataatttgaacataa 81  Q
    |||||||||||||||||||||||||||||    
T  25855467 attaattaaattttataatttgaacataa 25855495  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 25864234 - 25864266
Alignment:
Q  222 attttactaatttgcattatttgttgacataaa 254  Q
    ||||||||| |||||||||||||||||||||||    
T  25864234 attttactattttgcattatttgttgacataaa 25864266  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 17251674 - 17251619
Alignment:
Q  48 taaatattaattaaattttataatttgaacataaacaaagttaacttaaggtaaaac 104  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  17251674 taaatattaaataaattttataatttgaacat-aacaaagttaactaaaggtaaaac 17251619  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 21000691 - 21000735
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  21000691 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 21000735  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 56480 - 56528
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  56480 agtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 56528  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 42392934 - 42392886
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  42392934 agtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42392886  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 35461609 - 35461560
Alignment:
Q  266 gagtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||||| | |||||| || ||||||||||||| |||||||||||||    
T  35461609 gagtctagaagttctagctcaactggcaaatgccgaaattgcaaggtcgg 35461560  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 4601424 - 4601468
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  4601424 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 4601468  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 70651 - 70604
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  70651 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 70604  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 4531110 - 4531067
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  4531110 gtctagaagtcctagctcaattggcaaatgccgaaattgcaagg 4531067  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 12534847 - 12534803
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  12534847 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 12534803  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 35317825 - 35317778
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  35317825 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 35317778  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 26424993 - 26424942
Alignment:
Q  260 aaattcgagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||| |||||||||| |||||||| || ||||||||||||| |||||||||    
T  26424993 aaattagagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 26424942  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 53457824 - 53457871
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  53457824 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 53457871  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 19849633 - 19849588
Alignment:
Q  266 gagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    |||||||||| |||||||| || ||||||||||||| |||||||||    
T  19849633 gagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 19849588  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 34739279 - 34739323
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  34739279 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 34739323  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 11459715 - 11459762
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  11459715 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 11459762  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 34234530 - 34234577
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  34234530 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 34234577  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 42578180 - 42578227
Alignment:
Q  268 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 315  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  42578180 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42578227  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 32007070 - 32007117
Alignment:
Q  264 tcgagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    |||||||||||| |||||||| || ||||||||||||| |||||||||    
T  32007070 tcgagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 32007117  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 28455873 - 28455917
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  28455873 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 28455917  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 29994512 - 29994468
Alignment:
Q  267 agtctagaaatcctagctaaattggcaaatgccgatattgcaagg 311  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||    
T  29994512 agtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 29994468  T

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