View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19509_low_3 (Length: 523)
Name: NF19509_low_3
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 917409 - 917719
Alignment:
| Q |
16 |
atcaccaacagaaaagtcacacctttcatcgatcaaatcctcaacttcaacatccatgctctcactagcctccactattggatcctcaatagtctcaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
917409 |
atcaccaacagaaaagtcacacctttcatcgatcaaatcctcaacttcaacatccatgctctcactagcctccactattggatcctcaatagtctcaatc |
917508 |
T |
|
| Q |
116 |
ttcccatcagaattttcatccttgtttccttccgcgctctccttctcaaacatttcaacatcgatgctctcacttgcctccactgctggtacatcaacag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
917509 |
ttcccatcagaattttcatccttgtttccttccgcgctctccttctcaaacatttcaacatcgatgctctcacttgcctccactgctggtacatcaacag |
917608 |
T |
|
| Q |
216 |
actcaatcttcccatcacaattttgatcttttttcacctcttcactctcctcattcatttcaacatcaatgttctcgcttgtttccacaattggaacctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
917609 |
actcaatcttcccatcacaattttgatcttttttcacctcttcactctcctcattcatttcaacatcaatgttctcgcttgtttccacaattggaacctc |
917708 |
T |
|
| Q |
316 |
aacagtcgcaa |
326 |
Q |
| |
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||||||||||| |
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| T |
917709 |
aacagtcgcaa |
917719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 1000274 - 999965
Alignment:
| Q |
20 |
ccaacagaaaagtcacacctttcatcgatcaaatcctcaacttcaacatccatgctctcactagcctccactattggatcctcaatagtctcaatcttcc |
119 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1000274 |
ccaacagaaaagtcacacctttcatcaatcaaatcgtcaacttcaacatccatgctctcactagcctccactattggatcctcaatagtctcagtcttcc |
1000175 |
T |
|
| Q |
120 |
catcagaattttcatccttgtttccttccgcgctctccttctcaaacatttcaacatcgatgctctcacttgcctccactgctggtacatcaacagactc |
219 |
Q |
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| T |
1000174 |
catcacaattttcatctttttttccttccgcaccctccttctcagtcatttcaacatcgacactttcacttgcctccactttcggtacctcagtagactc |
1000075 |
T |
|
| Q |
220 |
aatcttcccatcacaattttgatcttttttcacctcttcact---ctcctcattcatttcaacatcaatgttctcgcttgtttccacaattggaacctca |
316 |
Q |
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||||||||||||||||||| | | |||| |||| || || || ||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
1000074 |
gatcttcccatcacaattttcacccttttctccctcctcgctatccttctcattcatctcaacatcaatgttctcacttgtttccactattggaacctca |
999975 |
T |
|
| Q |
317 |
acagtcgcaa |
326 |
Q |
| |
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|||||||||| |
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| T |
999974 |
acagtcgcaa |
999965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 369 - 507
Target Start/End: Original strand, 917876 - 918014
Alignment:
| Q |
369 |
ctttcaacaaagaagacaccccattattcacctcagaatcagccacaacctgagaatcattctccttcaaaatcaaaacctcggtctcaaaaacactact |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
917876 |
ctttcaacaaagaagacaccccattattcacctcagaatcagccacaacctgagaatcattctccttcaaaatcaaaacctcggtctcaaaaacactact |
917975 |
T |
|
| Q |
469 |
cttaacaacttccttaacattttcagctaaaccagtttc |
507 |
Q |
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| T |
917976 |
cttaacaacttccttaacattttcagctaaaccagtttc |
918014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 999781 - 999682
Alignment:
| Q |
381 |
aagacaccccattattcacctcagaatcagccacaacctgagaatcattctccttcaaaatcaaaacctcggtctcaaaaacactactcttaacaacttc |
480 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
999781 |
aagacaccccattattcacctcagaatcagccacagcctgagaatcattctccttcaaaatcgaaacctcggtctcgaaaacactaatcttaacaacttc |
999682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 999657 - 999551
Alignment:
| Q |
379 |
agaagacaccccattattcacctcagaatcagccacaacctgagaatcattctccttcaaaatcaaaacctcggtctcaaaaacactactcttaacaact |
478 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||| |
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| T |
999657 |
agaagacaccccattattcaccccagaatcattcacaacctgagaatcattttccttcaaaaccgaaacctcggtctcgaaaacactgctcttaacaact |
999558 |
T |
|
| Q |
479 |
tccttaa |
485 |
Q |
| |
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||||||| |
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| T |
999557 |
tccttaa |
999551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Original strand, 917736 - 917764
Alignment:
| Q |
343 |
cccctcctcgttctccttcccgttcactt |
371 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
917736 |
cccctcctcgttctccttcccgttcactt |
917764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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