View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19509_low_7 (Length: 285)
Name: NF19509_low_7
Description: NF19509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19509_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 44275492 - 44275233
Alignment:
| Q |
9 |
gaagaatataaaagcaacatgtaacttagtttgaagcagtcacgactttgtactcccttacttgatgttccaagaaaggtaacacaaaatctcatgttca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44275492 |
gaagaatataaaagcaacatgtaacttagtttgaagcagtcacgactttgtactcccttacttgatgttccaagaaaggtaacacaaaatctcatgttca |
44275393 |
T |
|
| Q |
109 |
aagggaataccaacaagcaggagtagccattaggaaggaagttagtttacatgccaaaactatcaaaattaataacatccaaaaatgttatttttcattt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44275392 |
aagggaataccaacaagcaggagtagccattaggaaggaagttagtttacatgccaaaactatcaaaattaataacatccaaaaatgttatttttcattt |
44275293 |
T |
|
| Q |
209 |
ggcctaagaaaaatagagaagtcaaattgaaaataacttggcttgaaactatacactcat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44275292 |
ggcctaagaaaaatagagaagtcaaattgaaaataacttggcttgaaactatacactcat |
44275233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University