View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1950_high_13 (Length: 235)
Name: NF1950_high_13
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30368871 - 30369089
Alignment:
| Q |
1 |
tgatcgcttttaaattattgtttgcaccaatgttttaaaattgacccggatgccgaactggtaaaatccatccctgattgtatttgcatttcaatttgaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30368871 |
tgatctcttttaaattattgtttgcaccaatgttttaaaattgacccggatgccgaactggcaaaatccatccctgattgtatttgcatttcaatttgaa |
30368970 |
T |
|
| Q |
101 |
attcaaatatgaaaatatgttggaatgagattataaactgtgaattcaaatttgaccaacaaagaagagatgtgtgtgccgaaccctccttgattcgccc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30368971 |
attcaaat--------atgttggaatgagattataaactgtgaattcaaatttgaccaacaaagaagagatgtgtgtgccgaaccatccttgattcgccc |
30369062 |
T |
|
| Q |
201 |
caaaggactaatagtatgtgatgatgt |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
30369063 |
caaaggactaatagtatgtgttgatgt |
30369089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 31406171 - 31406220
Alignment:
| Q |
92 |
caatttgaaattcaaatatgaaaatatgttggaatgagattataaactgt |
141 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
31406171 |
caatttgaaattcaaatatgaaagtatgttggaatgtgattataagctgt |
31406220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University