View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_high_17 (Length: 206)
Name: NF1950_high_17
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 24261771 - 24261945
Alignment:
| Q |
16 |
atgaaaacagttttaataaaaccctttatccaatgttatattactgcttgataatttaattgacagtgtgcggtaagttttctatggataagataagaaa |
115 |
Q |
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| T |
24261771 |
atgaaaacagttttaataaaaccctttatccaatgttatattactgcttgataatttaattgacagtgtgcagtaagttttctatggataagataagaaa |
24261870 |
T |
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| Q |
116 |
aattgcatttggccttcctgtaccaggattttctatatagttatacactgatttatggaatgtgattactttcct |
190 |
Q |
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| T |
24261871 |
aattgcatttggccttcctgtaccaggattttctatatatttatacgctgatttatggaatgtgattactttcct |
24261945 |
T |
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 14227223 - 14227133
Alignment:
| Q |
28 |
ttaataaaaccctttatccaatgttatattactgcttgataatttaattgacagtgtgcggtaagttttctatggataagataagaaaaat |
118 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||| |||||||| |||| |
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| T |
14227223 |
ttaataaaaccctttatcccgtgttatattactgctcgataaattaatggggagtgtgcagtaagttttctatggatgagataagagaaat |
14227133 |
T |
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