View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_high_7 (Length: 372)
Name: NF1950_high_7
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 24587107 - 24586759
Alignment:
| Q |
20 |
tccataagattgtgttttgttgaaactatgtagtattgctcttactaaactcatggagaatcgtttataaatttaaacatatacaaagtcagtccaaatt |
119 |
Q |
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| T |
24587107 |
tccataagattgtgttttgttgaaactatgtagtattgctcttactaaactcatggagaatcgtttataaatttaaacatatacaaagtcagtccaaatt |
24587008 |
T |
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| Q |
120 |
aaaggattagaaatttaactaatccaagagaatatataacccatttcgacctaaatatgttgtatcaaaacagatttgattgatgatatgacatagtcct |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24587007 |
aaaggattagaagtttaactaatccaagagaatatataacccttttcgacctaaacatgttgtatcaaaacagatttgattgatgatatgacatagtcct |
24586908 |
T |
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| Q |
220 |
atgttatggtggaatggtttgccatcacagtcttttctcatgcactaagaaaagtgtatgtctgcaacgtgcataaaatagacagatgtgcccacactgc |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24586907 |
atgttatggtggaatggtttgccatcacaggcttttctcatgcactaagaaaagtgtatgtctgcaacgtgcataaaatagacagatgtgcccacactgc |
24586808 |
T |
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| Q |
320 |
-cccctcgtggagtcactcaaaacgtgcataaattatagtattatctac |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24586807 |
ccccctcgtggagtcactcaaaacgtgcataaattatagtattatctac |
24586759 |
T |
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