View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_1 (Length: 633)
Name: NF1950_low_1
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Original strand, 40634687 - 40635259
Alignment:
| Q |
18 |
ttcgtgagggtatataggtaagaaaaatgctatatacagtgaaaagattcttgctagtacatggcgaaccgtattactagaaactgtatgtaaattccat |
117 |
Q |
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| T |
40634687 |
ttcgtgagggtatat--gtaagaaaaatgctatatacagtgaaaagattcttgctagtacatggcgaaccgtattactaggaactgtatgtaaattccat |
40634784 |
T |
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| Q |
118 |
tatgtaagctgcagggtgtaagtaataaatcacagactattctaaaactagcccatattcatattcatcagatagggatagacgaaaacaaatgtcagga |
217 |
Q |
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| T |
40634785 |
tatgtaagctgcagggtgtaagtaataaatcgcagactattttaaaactagcccatattcatattcatcagatagggatagacgaaaacaaatgtcagga |
40634884 |
T |
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| Q |
218 |
gaacgtaagatgatacgttagataatttttgtgggagtgttggaatctgatttttagtttaattgaactttctagtcggtcaataatgcttcatcaaaga |
317 |
Q |
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| T |
40634885 |
gaacgtaagatgatacgttagataatttttgtgggagtgtt-gaatctgatttttagtttaattgaactttctagtcggtcaataatgcttcatcaaaga |
40634983 |
T |
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| Q |
318 |
aaaagaaggcaaaagcaacaatccaatcataaacatttccatttaatcgaatgagtagacttgattgtccgaaacacttgtttggttta--------ttt |
409 |
Q |
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| T |
40634984 |
aaaagaaggcaaaagcaacaatccaatcataaacatttccatttaatcgaatgagtagacttgattgtccgaaacacttgtttggtttatctttctttct |
40635083 |
T |
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| Q |
410 |
ttctttctttcttctattaccttcgtttcccttcgctacaaaataatccaatatccatcaatccacatctatctatatctatctatctttataaaaacaa |
509 |
Q |
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| T |
40635084 |
ttctttctttcttctattaccttcgtttcccttcgctacaaaataatccaatatccatcaatccacatctatc--tatctatctatc----taaaagcaa |
40635177 |
T |
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| Q |
510 |
atggggttaagtcaagattaactactacattttgatgtattaagagcatcttgatctcacgtagctcaaccgcgtaataaag |
591 |
Q |
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| T |
40635178 |
atggggttaagtaaagattaactactacattttgatgtattaagagcatcttgatctcacgtagctcaaccgcgtaataaag |
40635259 |
T |
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