View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1950_low_10 (Length: 383)

Name: NF1950_low_10
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1950_low_10
NF1950_low_10
[»] chr2 (26 HSPs)
chr2 (19-364)||(9295142-9295487)
chr2 (48-337)||(9284735-9285011)
chr2 (190-361)||(10352570-10352739)
chr2 (24-252)||(9068636-9068867)
chr2 (244-361)||(9061681-9061799)
chr2 (23-73)||(10371185-10371235)
chr2 (23-73)||(9287941-9287991)
chr2 (311-361)||(9320550-9320600)
chr2 (23-73)||(10351512-10351562)
chr2 (313-361)||(9291519-9291567)
chr2 (23-73)||(8574241-8574291)
chr2 (84-216)||(9061802-9061930)
chr2 (105-180)||(10335163-10335235)
chr2 (23-70)||(9061958-9062005)
chr2 (71-179)||(9326820-9326924)
chr2 (23-73)||(10340788-10340838)
chr2 (313-361)||(9274146-9274194)
chr2 (25-61)||(10347062-10347098)
chr2 (253-292)||(9364107-9364146)
chr2 (97-144)||(10340878-10340924)
chr2 (23-73)||(9273940-9273990)
chr2 (190-244)||(9364009-9364063)
chr2 (262-344)||(9066155-9066234)
chr2 (97-133)||(9274028-9274064)
chr2 (84-132)||(9315503-9315551)
chr2 (313-361)||(9315600-9315648)
[»] chr3 (1 HSPs)
chr3 (245-361)||(37461982-37462099)
[»] chr8 (2 HSPs)
chr8 (23-73)||(41968174-41968224)
chr8 (312-361)||(41967235-41967284)
[»] scaffold0667 (1 HSPs)
scaffold0667 (71-180)||(1974-2079)
[»] chr4 (1 HSPs)
chr4 (98-144)||(26574416-26574461)
[»] chr1 (2 HSPs)
chr1 (314-344)||(29468299-29468329)
chr1 (93-145)||(29454036-29454087)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 9295487 - 9295142
Alignment:
Q  19 ttacgcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295487 ttacgcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaaca 9295388  T
Q  119 ttcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttctttaatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9295387 ttcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggaaaaaaagcaattcataccaaaattctttctttaatc 9295288  T
Q  219 taatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295287 taatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttt 9295188  T
Q  319 tgaaatccagcatacacacattgtcacacatacataaacaaagagt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9295187 tgaaatccagcatacacacattgtcacacatacataaacaaagagt 9295142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 48 - 337
Target Start/End: Complemental strand, 9285011 - 9284735
Alignment:
Q  48 tttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataa 147  Q
    |||| ||||||| ||| |||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  9285011 tttgaagtaattccattgtaggccaactttcttctcttt----ttcacaacagggtggaatagtctcaacattcagaaataagcgtgtacaaaataatta 9284916  T
Q  148 ttaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgcaaat 247  Q
    |||    ||||| ||||||||||||||| ||||        |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  9284915 tta----ggagt-aagatcataaacaataaatg-aaaaaaagcaattcataacaaaattcattctttaatctaatttaaaagaaaaggaatcctggaaat 9284822  T
Q  248 tctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttttgaaatccagcatacacac 337  Q
    ||||||||||||||||||||||| ||||||||||||||  | |||| |||    | ||||||  ||||||||||||||||| ||||||||    
T  9284821 tctttagctagtcacaaggtcaactcttaaaccgaaaccgagcatgcatt---atatttcttcctttcttttgaaatccagtatacacac 9284735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 10352570 - 10352739
Alignment:
Q  190 caattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataa 289  Q
    ||||||||  ||||| |||||||| ||| |||||| ||||||||||||| |||||||||||||||| | |||||||||||| || |||| | | |||||     
T  10352570 caattcatttcaaaagtctttcttcaatgtaattttaaagaaaaggaatgctgcaaattctttagcaactcacaaggtcaactcctaaaacaacacatag 10352669  T
Q  290 catgtattgcattttttcttggtttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    |||  ||||   | ||| || ||||||||||||||  ||||||||||||||||  || ||||||||||||||    
T  10352670 catacattgttgtctttttttgtttcttttgaaataaagcatacacacattgt--catatacataaacaaag 10352739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 9068867 - 9068636
Alignment:
Q  24 cttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa-----------ctttcttctgtttacatttcacaacagggtggaatagtc 112  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||||||||           ||||||||| |||||||  |||  |||||  |||||| |    
T  9068867 cttttgaaaggaattatgcata--tttggagtaatttcatggtaggccaatttctaaacaactttcttctctttacataccacggcagggaagaataggc 9068770  T
Q  113 tcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttct 212  Q
    |||||||||||||| |||||||| ||| ||||| |||   |||||| |||||||  ||| ||||||||        ||||||||||||||||||||||||    
T  9068769 tcaacattcagaaataagcttgt-caagataattatt---taggagcgaagatctcaaagaatgaatg-aaaaaaagcaattcataccaaaattctttct 9068675  T
Q  213 ttaatctaatttaaaagaaaaggaatcctgcaaattcttt 252  Q
    |||||||||||| |||| |||||||||||||| |||||||    
T  9068674 ttaatctaattttaaag-aaaggaatcctgcagattcttt 9068636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 361
Target Start/End: Complemental strand, 9061799 - 9061681
Alignment:
Q  244 aaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgc-attttttcttggtttcttttgaaatccagcatacacacattgt 342  Q
    |||||||||| |||||||||||||||| || |||||  ||||||| |||  | ||  |||  || || ||||||||||||||||||||||||||||||||    
T  9061799 aaattctttatctagtcacaaggtcaactcctaaactaaaacatagcatacaatgttattaattttttgtttcttttgaaatccagcatacacacattgt 9061700  T
Q  343 cacacatacataaacaaag 361  Q
    |||| ||||||||||||||    
T  9061699 cacatatacataaacaaag 9061681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 10371185 - 10371235
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10371185 gcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaa 10371235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9287941 - 9287991
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9287941 gcttttgcaaggaactatgcataaatttggagtaatttcatggtaggccaa 9287991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 9320550 - 9320600
Alignment:
Q  311 gtttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9320550 gtttcttttgaaatccagcatacacacattgtcacatatacgtaaacaaag 9320600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 10351512 - 10351562
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10351512 gcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaa 10351562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 9291519 - 9291567
Alignment:
Q  313 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9291519 ttcttttgacatccagcatacacacattgtcacatatacataaacaaag 9291567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8574291 - 8574241
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  8574291 gcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaa 8574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 9061930 - 9061802
Alignment:
Q  84 tttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnn 183  Q
    |||||||  |||| ||||||||||||||||| ||||||||||| ||| |||  |||   |||||||| ||||||||||| |||  ||||||||||||       
T  9061930 tttacataccacagcagggtggaatagtctccacattcagaaataag-ttggccaa---aataattatttaggagtgaaaatctcaaacaatgaatgaaa 9061835  T
Q  184 nnnnngcaattcataccaaaattctttctttaa 216  Q
         ||||||||||||||||||| ||||||||    
T  9061834 caaaagcaattcataccaaaattcgttctttaa 9061802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 10335163 - 10335235
Alignment:
Q  105 gaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatg 180  Q
    |||||||||||||||||||||| |||||||| |||||||  ||||| |||||||||||||||  ||||||| ||||    
T  10335163 gaatagtctcaacattcagaaataagcttgt-caaaata--aattatttaggagtgaagatctcaaacaataaatg 10335235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 9062005 - 9061958
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggc 70  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||    
T  9062005 gcttttgaatgaaactatgcataaatttggagtaatttcatggtaggc 9061958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 9326820 - 9326924
Alignment:
Q  71 caactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataa 170  Q
    |||||||||||| |||||||  |||  ||| ||||||||||||||||||||||||| ||| | ||| ||||    ||||| ||||||||||| |||  ||    
T  9326820 caactttcttctctttacataccacggcagtgtggaatagtctcaacattcagaaataagttggtaaaaaa----aattatttaggagtgaaaatctcaa 9326915  T
Q  171 acaatgaat 179  Q
    |||||||||    
T  9326916 acaatgaat 9326924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 10340788 - 10340838
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    |||||||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  10340788 gcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaa 10340838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 9274146 - 9274194
Alignment:
Q  313 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  9274146 ttctttagaaatcatgcatacacacattgtcacatatacataaacaaag 9274194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 10347062 - 10347098
Alignment:
Q  25 ttttgaaaggaactatgcctaaatttggagtaatttc 61  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10347062 ttttgaaaggaactatgcataaatttggagtaatttc 10347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 9364107 - 9364146
Alignment:
Q  253 agctagtcacaaggtcaattcttaaaccgaaacataacat 292  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  9364107 agctagtcacaaggtcaactcttaaaccgacacataacat 9364146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 10340878 - 10340924
Alignment:
Q  97 acagggtggaatagtctcaacattcagaaagaagcttgtacaaaataa 144  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  10340878 acagggtgtaatagtctcaacattcagaaataagcttgt-caaaataa 10340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9273940 - 9273990
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    |||||||||||||||||||| |||||||  | ||||||||| |||||||||    
T  9273940 gcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaa 9273990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 9364009 - 9364063
Alignment:
Q  190 caattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgca 244  Q
    |||||||||||||  |||||||||||| |||| ||  ||||||||||||||||||    
T  9364009 caattcataccaaggttctttctttaagctaacttttaagaaaaggaatcctgca 9364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 9066234 - 9066155
Alignment:
Q  262 caaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttttgaaatccagcatacacacattgtca 344  Q
    ||||||||| |||||||| || || ||||||| ||||  ||||||    |||||||||| |||| ||||||||||||||||||    
T  9066234 caaggtcaactcttaaactgacacgtaacatgcattgtctttttta---gtttcttttggaatcaagcatacacacattgtca 9066155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 9274028 - 9274064
Alignment:
Q  97 acagggtggaatagtctcaacattcagaaagaagctt 133  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  9274028 acagggtggaatagtcttaacattcagaaataagctt 9274064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 9315503 - 9315551
Alignment:
Q  84 tttacatttcacaacagggtggaatagtctcaacattcagaaagaagct 132  Q
    |||||||  |||| ||||||||||||||||||||||||| ||| |||||    
T  9315503 tttacataccacagcagggtggaatagtctcaacattcaaaaataagct 9315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 9315600 - 9315648
Alignment:
Q  313 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    |||||||||||||||||| ||||||| ||||||| | | ||||||||||    
T  9315600 ttcttttgaaatccagcacacacacaatgtcacatagagataaacaaag 9315648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 37461982 - 37462099
Alignment:
Q  245 aattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcatttt---ttcttggtttcttttgaaatccagcatacacacattg 341  Q
    |||||||||||||||||||||||||||||||||||  | |||||  ||  ||||  || |   || ||  |||||||||||||| |||||||||||||||    
T  37461982 aattctttagctagtcacaaggtcaattcttaaactaacacatagaattcattg--ttgtcaattttttatttcttttgaaatctagcatacacacattg 37462079  T
Q  342 tcacacatacataaacaaag 361  Q
    ||||| ||||||||||||||    
T  37462080 tcacatatacataaacaaag 37462099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 41968224 - 41968174
Alignment:
Q  23 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 73  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||    
T  41968224 gcttctgaaaggaactatgcataaattaggagtaatttcatggtaggccaa 41968174  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 41967284 - 41967235
Alignment:
Q  312 tttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 361  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  41967284 tttcttttgaaatccagcatacacacattatcacatgtacataaacaaag 41967235  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 1974 - 2079
Alignment:
Q  71 caactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataa 170  Q
    |||||||||| | |||||||  |||  ||||||||||||||||||||||||||||| ||||| || |||   |||||||| |||||||| || |||  ||    
T  1974 caactttcttttctttacataacacggcagggtggaatagtctcaacattcagaaataagctggt-caa---aataattatttaggagtcaaaatctcaa 2069  T
Q  171 acaatgaatg 180  Q
    ||||||||||    
T  2070 acaatgaatg 2079  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 26574416 - 26574461
Alignment:
Q  98 cagggtggaatagtctcaacattcagaaagaagcttgtacaaaataa 144  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  26574416 cagggtggaatagtctcaacattcagaaataagcatgt-caaaataa 26574461  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 29468329 - 29468299
Alignment:
Q  314 tcttttgaaatccagcatacacacattgtca 344  Q
    |||||||||||||||||||||||||||||||    
T  29468329 tcttttgaaatccagcatacacacattgtca 29468299  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 29454087 - 29454036
Alignment:
Q  93 cacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataat 145  Q
    |||||||||||||||||| |||||||||| |||| ||| ||| ||||||||||    
T  29454087 cacaacagggtggaatagactcaacattccgaaataagtttg-acaaaataat 29454036  T

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