View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_13 (Length: 358)
Name: NF1950_low_13
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 67 - 288
Target Start/End: Original strand, 12984943 - 12985168
Alignment:
| Q |
67 |
taaggagcatagatttttattgctcccatgctttacacaatgtttcattggagcattgagtgaagacatcaattgttgcattagcataataaattatgct |
166 |
Q |
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| T |
12984943 |
taaggagcacaaatttgtatcgtttccatgcttcacacaatatttcactggagctttgagtgaagacatcaattgtggcat-agcataataaatcatgct |
12985041 |
T |
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| Q |
167 |
ttgagaaaataatcttgcgacaaatttatcttttaaagtgttcaaatttttcag-----ttgttgctgttgtttggtctaggtaccaatctttgaaacgt |
261 |
Q |
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| T |
12985042 |
ccgaggaaataatcttccaataaacttatcttttaaagtgttccaatttgtcagagttgttgttgttgttgtttggtctatgtaccaatctttgaaacgt |
12985141 |
T |
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| Q |
262 |
ccgagaagtgagtgggggaatcaacct |
288 |
Q |
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| T |
12985142 |
ccgaaaagtaagtgggggagtcaacct |
12985168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 19728487 - 19728437
Alignment:
| Q |
18 |
ctaaagatatcgatttgagttatgtcgtcaaattcattgttcggacattta |
68 |
Q |
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| T |
19728487 |
ctaaagatatcgatttgagttatgtcgtcaaattcattgttcgtacattta |
19728437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 12985204 - 12985247
Alignment:
| Q |
296 |
gagggattcaactttctcataaatcttccaagatagttaatggg |
339 |
Q |
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| T |
12985204 |
gagggattcaactatctcataaatctttcaagatagttaatggg |
12985247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 19727771 - 19727740
Alignment:
| Q |
66 |
ttaaggagcatagatttttattgctcccatgc |
97 |
Q |
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| T |
19727771 |
ttaaggagcatagatttttattgctcccatgc |
19727740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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