View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_14 (Length: 340)
Name: NF1950_low_14
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 1330377 - 1330520
Alignment:
| Q |
42 |
attcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaataagcaaaagaccattccg |
141 |
Q |
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| T |
1330377 |
attcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacccaaagtgccgcgtgccaaataagcaaaagaccattccg |
1330476 |
T |
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| Q |
142 |
gtgccgcttatttcttgtctccctactccaacattcccaatgaa |
185 |
Q |
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| T |
1330477 |
gtgcagcttatttctcgtctccctactccaacattcccaatgaa |
1330520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 1330545 - 1330691
Alignment:
| Q |
188 |
agaactccggccaagaaaacaagttagcccaaatttggcaagccacctcacaatgt--aaaaatgtgagaagatgtttca--------attgcacaaaat |
277 |
Q |
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| T |
1330545 |
agaactccagccaagaaaacaagttagcccaaatttggcaagccacctcacaatgtagaaaaatgtgagaagatgtttcaattgtagtattgcacaaaac |
1330644 |
T |
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| Q |
278 |
acacacatccgatgcgcccggcggtaaaatgttacgcactaagaggt |
324 |
Q |
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| T |
1330645 |
acacacatccgatgcgcccggcggtaaaatgttacacactaagaggt |
1330691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 9850619 - 9850762
Alignment:
| Q |
42 |
attcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaataagcaaaagaccattccg |
141 |
Q |
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| T |
9850619 |
attcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccgtgtgccaaataagccaaagaccattcca |
9850718 |
T |
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| Q |
142 |
gtgccgcttatttcttgtctccctactccaacattcccaatgaa |
185 |
Q |
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| T |
9850719 |
gtgccgtttatttctcgcccccccactccaacattcccaatgaa |
9850762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 14247594 - 14247698
Alignment:
| Q |
42 |
attcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaataagcaaaagaccattccg |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
14247594 |
attcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagaccattccg |
14247693 |
T |
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| Q |
142 |
gtgcc |
146 |
Q |
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||||| |
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| T |
14247694 |
gtgcc |
14247698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 9850781 - 9850834
Alignment:
| Q |
179 |
caatgaaggagaactccggccaagaaaacaagttagcccaaatttggcaagcca |
232 |
Q |
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||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |
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| T |
9850781 |
caatgaaggagaactccagccaagaaaacaagtttgccccaatttgacaagcca |
9850834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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