View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1950_low_18 (Length: 236)
Name: NF1950_low_18
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10074554 - 10074778
Alignment:
| Q |
1 |
caagtttagtaattccatc----ttttcttccatggagtttatctacaccagcatgcttcttgtattggtattttttgatatgcaacttataatttctta |
96 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10074554 |
caagtttagtaattccatcgatcttttcttccatggagtttatctacaccaacatgcttcttgtattggtattttttgatatgcaacttataatttctta |
10074653 |
T |
|
| Q |
97 |
ttttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaactttcagattacgtgatcaatcgcatcattgacaaggtgattt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10074654 |
ttttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaactttcagattacgtgatcaatcgcatcattgacaaggtgattt |
10074753 |
T |
|
| Q |
197 |
attcatctgataacactatgcatgt |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10074754 |
attcatctgataacactatgcatgt |
10074778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 10063930 - 10064055
Alignment:
| Q |
86 |
ataatttcttattttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaactttcagattacgtgatcaatcgcatcattga |
185 |
Q |
| |
|
||||||| ||||||| ||||||||| || || ||||||||||||||||||||||||||| | || ||||||||||| | |||| ||| |||||||||| |
|
|
| T |
10063930 |
ataattttttattttatgtatagttaaagcaattggtggtagctactctatctgaatctgacatggaactttcagatgaaatgattaatggcatcattga |
10064029 |
T |
|
| Q |
186 |
caaggtgatttattcatctgataaca |
211 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
10064030 |
caaggtgatttatttatctgataaca |
10064055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 10031900 - 10032016
Alignment:
| Q |
99 |
ttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaactttcagattacgtgatcaatcgcatcattgacaaggtgatttat |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||| || |||| |||| | || | ||| ||||||| ||||||||||||||| |
|
|
| T |
10031900 |
ttgtgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgagacttacagaagaaatgcttaatagcatcatggacaaggtgatttat |
10031999 |
T |
|
| Q |
199 |
tcatctgataacactat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10032000 |
ctatctgataacactat |
10032016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 10053813 - 10053929
Alignment:
| Q |
99 |
ttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaactttcagattacgtgatcaatcgcatcattgacaaggtgatttat |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| |||| || |||| |||| | || | ||| ||||||| ||||||||||||||| |
|
|
| T |
10053813 |
ttgtgtatagttgaaacaaatggtggtagctactctatcggaatttggcatgagacttacagaagaaatgcttaatagcatcatggacaaggtgatttat |
10053912 |
T |
|
| Q |
199 |
tcatctgataacactat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10053913 |
ctatctgataacactat |
10053929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University