View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_2 (Length: 565)
Name: NF1950_low_2
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 160 - 450
Target Start/End: Original strand, 14507520 - 14507810
Alignment:
| Q |
160 |
gtacaattctttttagaataaatactttttactaatatgactgttacttactattggatgaagactataatacataaggaaaatacaaagtgttttacca |
259 |
Q |
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| T |
14507520 |
gtacaattctttttagaataaatactttttactaatatgactgttacttactattggatgaagactataatacataaggaaaatacaaagtgttttacca |
14507619 |
T |
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| Q |
260 |
aaagctgtattaaaattaggtgatcaacagtaactaactatcactaacaaagatccaaaatggtgatagaactgaaaaagtgaaaagagattttgagaaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14507620 |
aaagctgtattaaaattaggtgatcaacagtaactaactatcactaacaaagatccaaaatggtgatagaactgaaaaagtgaaaagagattttgagaaa |
14507719 |
T |
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| Q |
360 |
attgtgtgtcgccaaggacccgactcgtgagacactttgtcgtaacatatgactcaattggcttgataagtagctattacatgtcatgctc |
450 |
Q |
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| T |
14507720 |
attgtttgtcgccaaggacccgactcgtgagacactttgtcttaacatatgactcaattggcttgataagtagctattacatgtcatgctc |
14507810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 14507833 - 14507934
Alignment:
| Q |
449 |
tcaatcagaatttcaggtcagccatttgaccatattttgtaaataaaataatgaatttagatgtaacattgacccattccgagtttgttcttatgaattt |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14507833 |
tcaatcagaatttcaggtcagccatttgaccatattttgtaaataaaataatgaatttagatgtaacattgacccattccgagtttgttcttatgaattt |
14507932 |
T |
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| Q |
549 |
ag |
550 |
Q |
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|| |
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| T |
14507933 |
ag |
14507934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 14507397 - 14507453
Alignment:
| Q |
16 |
aatattcatgtaaccttatagttctctttctttttagattttgaccctctttttcta |
72 |
Q |
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| T |
14507397 |
aatattcatgtaaccttatagttctctttctttttaggttttgaccctctttttcta |
14507453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 24364971 - 24364923
Alignment:
| Q |
24 |
tgtaaccttatagttctctttctttttagattttgaccctctttttcta |
72 |
Q |
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|||||||||||||||||||||| |||| || |||||||||||||||||| |
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| T |
24364971 |
tgtaaccttatagttctctttcattttggactttgaccctctttttcta |
24364923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 25337954 - 25337906
Alignment:
| Q |
24 |
tgtaaccttatagttctctttctttttagattttgaccctctttttcta |
72 |
Q |
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|||||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
25337954 |
tgtaaccttatagttctctttcattttagattttgtctctctttttcta |
25337906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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