View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_20 (Length: 234)
Name: NF1950_low_20
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_20 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 18329450 - 18329344
Alignment:
| Q |
76 |
ccattaggtaacgttaacgaattaaaactaacaaaaggtaacaaagataaaatacgagcttgttttatagcaatcgtaattaatcgttgttgttttaagg |
175 |
Q |
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| T |
18329450 |
ccattaggtaacgttaacgaattaaaactaacaaaaggtaacaaagataaaatacgagcttgttttatagcaatcgtaattaatcgttgttgttttaagg |
18329351 |
T |
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| Q |
176 |
ttgatct |
182 |
Q |
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||||||| |
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| T |
18329350 |
ttgatct |
18329344 |
T |
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Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 266250 - 266180
Alignment:
| Q |
112 |
ggtaacaaagataaaatacgagcttgttttatagcaatcgtaattaatcgttgttgttttaaggttgatct |
182 |
Q |
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| T |
266250 |
ggtaaaaaagataaaatacgagcctgttttatagcaagagtaattaatcgttgttgtttcaaggttaatct |
266180 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 8184657 - 8184588
Alignment:
| Q |
104 |
taacaaaaggtaacaaagataaaatacgagcttgttttatagcaatcgtaattaatcgttgttgttttaa |
173 |
Q |
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| T |
8184657 |
taacaaaaggtaacaaaaataaaatacgagcttggtttataacgattgtaatttatcgttgtttttttaa |
8184588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 27782319 - 27782282
Alignment:
| Q |
183 |
tctgcatcacatttggttcaccccttgttggtgataag |
220 |
Q |
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| T |
27782319 |
tctgcatcacatttggttcaccccttgttggtgataag |
27782282 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5932863 - 5932907
Alignment:
| Q |
104 |
taacaaaaggtaacaaagataaaatacgagcttgttttatagcaa |
148 |
Q |
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| T |
5932863 |
taacaaaaggtaataatgataaaatacgagcttgttttatagcaa |
5932907 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 25071139 - 25071168
Alignment:
| Q |
114 |
taacaaagataaaatacgagcttgttttat |
143 |
Q |
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| T |
25071139 |
taacaaagataaaatacgagcttgttttat |
25071168 |
T |
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