View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1950_low_3 (Length: 484)

Name: NF1950_low_3
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1950_low_3
NF1950_low_3
[»] chr2 (15 HSPs)
chr2 (15-484)||(10587032-10587501)
chr2 (127-198)||(41702119-41702190)
chr2 (127-194)||(30602340-30602407)
chr2 (129-194)||(2626038-2626103)
chr2 (127-184)||(3208433-3208490)
chr2 (127-184)||(4413255-4413312)
chr2 (127-165)||(9685604-9685642)
chr2 (127-201)||(17344482-17344556)
chr2 (127-201)||(41868096-41868170)
chr2 (127-184)||(27494172-27494229)
chr2 (127-184)||(28224861-28224918)
chr2 (127-169)||(20143134-20143176)
chr2 (127-168)||(15515336-15515377)
chr2 (127-184)||(18745143-18745200)
chr2 (131-184)||(38723985-38724038)
[»] chr8 (10 HSPs)
chr8 (127-194)||(38815145-38815212)
chr8 (127-201)||(18804457-18804531)
chr8 (127-184)||(22589525-22589582)
chr8 (140-194)||(3863162-3863216)
chr8 (128-184)||(18596789-18596845)
chr8 (127-191)||(24320191-24320255)
chr8 (135-194)||(3825487-3825546)
chr8 (127-194)||(12751035-12751102)
chr8 (127-165)||(37514101-37514139)
chr8 (127-184)||(44337201-44337257)
[»] chr3 (8 HSPs)
chr3 (127-184)||(26772619-26772676)
chr3 (127-184)||(32546656-32546713)
chr3 (127-189)||(39583418-39583480)
chr3 (127-184)||(44694-44751)
chr3 (127-194)||(8591992-8592059)
chr3 (130-201)||(53785553-53785624)
chr3 (128-193)||(3643005-3643070)
chr3 (127-168)||(26856951-26856992)
[»] chr1 (13 HSPs)
chr1 (127-184)||(5453956-5454013)
chr1 (127-184)||(868590-868647)
chr1 (127-201)||(19035323-19035397)
chr1 (127-185)||(30688417-30688475)
chr1 (127-184)||(7213104-7213161)
chr1 (127-184)||(22346756-22346813)
chr1 (127-198)||(28493520-28493591)
chr1 (127-201)||(21472847-21472921)
chr1 (127-184)||(24177700-24177757)
chr1 (130-194)||(4862182-4862246)
chr1 (136-200)||(50161622-50161686)
chr1 (127-184)||(1114057-1114114)
chr1 (127-179)||(20259986-20260038)
[»] chr4 (13 HSPs)
chr4 (127-194)||(26521340-26521407)
chr4 (127-184)||(3329857-3329914)
chr4 (127-184)||(31846964-31847021)
chr4 (127-184)||(50001115-50001172)
chr4 (127-194)||(23604941-23605008)
chr4 (127-182)||(39001260-39001315)
chr4 (127-197)||(40392743-40392813)
chr4 (127-184)||(30940921-30940978)
chr4 (127-194)||(25931974-25932041)
chr4 (134-184)||(4419125-4419175)
chr4 (127-184)||(53619447-53619504)
chr4 (127-194)||(12053318-12053385)
chr4 (127-184)||(132246-132303)
[»] scaffold0309 (1 HSPs)
scaffold0309 (127-201)||(5168-5242)
[»] chr7 (13 HSPs)
chr7 (127-184)||(38766185-38766242)
chr7 (127-184)||(38832163-38832220)
chr7 (135-194)||(2520918-2520977)
chr7 (127-184)||(25187120-25187177)
chr7 (127-184)||(45003086-45003143)
chr7 (127-201)||(19277135-19277209)
chr7 (127-184)||(28517476-28517533)
chr7 (128-169)||(45614032-45614073)
chr7 (127-169)||(982825-982867)
chr7 (127-201)||(21327027-21327101)
chr7 (127-201)||(45974788-45974862)
chr7 (142-183)||(40726684-40726725)
chr7 (128-184)||(36931892-36931948)
[»] chr6 (8 HSPs)
chr6 (127-184)||(17249494-17249551)
chr6 (128-184)||(33220901-33220957)
chr6 (128-184)||(7749342-7749398)
chr6 (127-194)||(34168772-34168839)
chr6 (126-190)||(947956-948020)
chr6 (133-184)||(45816-45867)
chr6 (127-169)||(28625807-28625849)
chr6 (127-179)||(28009176-28009228)
[»] scaffold0009 (1 HSPs)
scaffold0009 (127-202)||(102949-103024)
[»] chr5 (8 HSPs)
chr5 (127-184)||(33692241-33692298)
chr5 (127-184)||(2917550-2917607)
chr5 (127-184)||(13167099-13167156)
chr5 (135-184)||(27913491-27913540)
chr5 (127-194)||(24113426-24113493)
chr5 (142-184)||(35310309-35310351)
chr5 (127-201)||(42921542-42921616)
chr5 (127-184)||(25663221-25663278)
[»] scaffold0406 (1 HSPs)
scaffold0406 (127-179)||(6754-6806)
[»] scaffold0110 (1 HSPs)
scaffold0110 (127-201)||(47709-47783)


Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 10587032 - 10587501
Alignment:
Q  15 cagaaacaactccaaatggtccatttataaggataggaaaagtccataggcgaaatcttggatacttggaattcttcttcctgccatcaaaatccatgtc 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587032 cagaaacaaccccaaatggtccatttataaggataggaaaagtccataggcgaaatcttggatacttggaattcttcttcctgccatcaaaatccatgtc 10587131  T
Q  115 aaaaacaatataaaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatattaaagccttaaga 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  10587132 aaaaacaatataaaaaaggtctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaatccttgatatatatatattaaagccttaaga 10587231  T
Q  215 tgaaattaattcgagtttaattggtatgcactatctcagtctcagtgtaaaaaacttctacagatgcattcaatcgcatctccttgcatatgtatctgta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10587232 tgaaattaattcgagtttaattggtatgcactatctcagtctcagtgtaaaaaacttctacacatgcattcaatcgcatctccttgcatatgtatctgta 10587331  T
Q  315 gagatattttaggaactaatatagcaaaatgacataataatgaaacatgattggatatttacactgatagtgtatacaaattaaattcaattaatccaat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10587332 gagatattttaggaactaatatagcaaaatgacataataatgaaacatgattggatatttacactgatagtgtatacaaattaaattcaattaatccagt 10587431  T
Q  415 gcacagataaggaaagtatgtagaaatcacatactcaggaagctgatcctccccagaaataattaggtat 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587432 gcacagataaggaaagtatgtagaaatcacatactcaggaagctgatcctccccagaaataattaggtat 10587501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 41702190 - 41702119
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaata 198  Q
    ||||||| |||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  41702190 aaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaatccttgatataaata 41702119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 30602407 - 30602340
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||| ||||| |||||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  30602407 aaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaatccttgatata 30602340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 2626038 - 2626103
Alignment:
Q  129 aaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||||| ||||||||||||||| ||| ||||||||||| ||||||||| ||||  ||||||||    
T  2626038 aaaggtctaacggcgcagcttgttgtccgcttgccttctattcatgtgtaattaattattgatata 2626103  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 3208433 - 3208490
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||| |||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  3208433 aaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 3208490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 4413255 - 4413312
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||  ||||||||||| || |||||| ||||    
T  4413255 aaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaagtgtaaataat 4413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 9685604 - 9685642
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgcctt 165  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9685604 aaaaaggtctagcggcgcagcttgttgcccgcttgcctt 9685642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 17344556 - 17344482
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||| ||||||||||||||||| | ||||||||||| || |||||| ||||  || ||||| ||||||    
T  17344556 aaaaaggtctatcggcgcagcttgttgccggcttgccttctattcaagtgtaaataatgatttatatatatatat 17344482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 41868096 - 41868170
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    |||||| |||||||||||| ||||||||||| |||| |||||| || |||||| ||||  || ||||||||||||    
T  41868096 aaaaagatctagcggcgcaacttgttgcccgcttgctttctattcaagtgtaaataatggtttatataaatatat 41868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 27494229 - 27494172
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||| ||||||||||||||||| | |||||| |||| ||| ||||||||||    
T  27494229 aaaaaggtctaacggcgcagcttgttgcctgcttgcctcctattcatatgtaagtaat 27494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 28224918 - 28224861
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||| ||||||| ||| || |||| ||| ||||||||||    
T  28224918 aaaaaggtctagcggcgcagcttattgcccgcttgtctcctattcatttgtaagtaat 28224861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 20143134 - 20143176
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctat 169  Q
    ||||||||||||||||||| ||||||| | |||||||||||||    
T  20143134 aaaaaggtctagcggcgcaacttgttgtctgtttgccttctat 20143176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 15515336 - 15515377
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttcta 168  Q
    ||||| |||||||||||||| |||||||| ||||||||||||    
T  15515336 aaaaaagtctagcggcgcagtttgttgcctgtttgccttcta 15515377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 18745143 - 18745200
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||| |||| || ||| ||||||| || |||||| ||||    
T  18745143 aaaaaggtctagcggcgcagcttattgctcgcttgtcttctattcaagtgtaaataat 18745200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 38723985 - 38724038
Alignment:
Q  131 aggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||| |||||||||||| || |||||| ||||  |||||||||||||    
T  38723985 aggtctagcggtgcagcttgttgctcgcttgcctcctatttatgtgtaagtaat 38724038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 38815212 - 38815145
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    |||||||  |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  38815212 aaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatgtgtaagcaatccttgatata 38815145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 18804531 - 18804457
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||||||||||||||||||||| | ||||||||||| || |||||| ||||  || |||||| |||||    
T  18804531 aaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaaataatggtttatataattatat 18804457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 22589525 - 22589582
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| || |||||| ||||    
T  22589525 aaaaaggtctagcggcgcagcttgttgcccgcttgccttttattcaagtgtaaataat 22589582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 3863216 - 3863162
Alignment:
Q  140 ggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||||||||||  ||||||| |||||| ||||||||| ||||||||||||||    
T  3863216 ggcgcagcttgttggtcgtttgcattctattcatgtgtaattaatccttgatata 3863162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 18596789 - 18596845
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||||||||| | | ||||||||||| || |||||| ||||    
T  18596789 aaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataat 18596845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 24320255 - 24320191
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgat 191  Q
    ||||||||||||| | ||||||||||||| ||||| ||||||| | ||||||| ||||| |||||    
T  24320255 aaaaaggtctagcagtgcagcttgttgcctgtttgtcttctattcgtgtgtaattaatcattgat 24320191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 3825546 - 3825487
Alignment:
Q  135 ctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||||||| |||||||| |||||| ||| |||  |||||||| ||||||||||||||    
T  3825546 ctagcggcgcaacttgttgctcgtttgtcttttatttatgtgtaattaatccttgatata 3825487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 12751035 - 12751102
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||| ||||| ||||||||||||| | |||||| ||||||  |||||||| ||||| ||||||||    
T  12751035 aaaaaggcctagcagcgcagcttgttgtcagtttgctttctatttatgtgtaattaatcattgatata 12751102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 37514139 - 37514101
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgcctt 165  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  37514139 aaaaaggtctaacggcgcagcttgttgcccgcttgcctt 37514101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 44337257 - 44337201
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||| |||||| ||||||||||| || |||||| |||| ||||||||||||||    
T  44337257 aaaaaggtccagcggc-cagcttgttgctcgcttgcctcctattcatgtgtaagtaat 44337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 26772676 - 26772619
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  26772676 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 26772619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 32546713 - 32546656
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  32546713 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 32546656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 39583418 - 39583480
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttg 189  Q
    ||||||||||||||||||| ||||||| | | |||| |||||| |||||||||||||||||||    
T  39583418 aaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaagtaatccttg 39583480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 44751 - 44694
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||| |||||||||| ||||||||||| || |||||| ||||    
T  44751 aaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaaataat 44694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 8592059 - 8591992
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||| | |||||||||||||||| |||  ||||||| ||| |||||||||||||| |||||||||    
T  8592059 aaaaaggcccagcggcgcagcttgttacccacttgccttatattcatgtgtaagtaattcttgatata 8591992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 53785624 - 53785553
Alignment:
Q  130 aaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    |||||| ||||||| ||||||||||||| ||||||||||| || |||||| ||||  || ||||| ||||||    
T  53785624 aaggtccagcggcgtagcttgttgcccgcttgccttctattcaagtgtaaataatggtttatatatatatat 53785553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 3643070 - 3643005
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatat 193  Q
    |||||| ||| || |||||||| ||||||| |||||||||||   ||||||| |||||||||||||    
T  3643070 aaaaggcctaacgacgcagcttattgcccgcttgccttctattattgtgtaattaatccttgatat 3643005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 26856951 - 26856992
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttcta 168  Q
    ||||||| |||||||||||||||||||| || ||||||||||    
T  26856951 aaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 26856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 5454013 - 5453956
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  5454013 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 868590 - 868647
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  868590 aaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 19035397 - 19035323
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| || |||||| ||||  || ||||| ||||||    
T  19035397 aaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataatggtttatatatatatat 19035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 30688475 - 30688417
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatc 185  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |||||    
T  30688475 aaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaatc 30688417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 7213161 - 7213104
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| || |||||| ||||    
T  7213161 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 7213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 22346813 - 22346756
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| || |||||| ||||    
T  22346813 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataat 22346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 28493520 - 28493591
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaata 198  Q
    |||||||||||||||||||| |||||| ||||||| ||||||| || |||||| ||||  || |||||||||    
T  28493520 aaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataatgatttatataaata 28493591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 21472921 - 21472847
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||||||||||| ||| ||||||| |||| |||||| || |||||| ||||  || ||||||||||||    
T  21472921 aaaaaggtctagcggcgcaacttattgcccgcttgcattctattcaagtgtaaataatggtttatataaatatat 21472847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 24177700 - 24177757
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||| || |||||| ||||    
T  24177700 aaaaaggtctagcggtgcagcttgttgcccgcttgtcttctattcaagtgtaaataat 24177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 4862182 - 4862246
Alignment:
Q  130 aaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    |||| ||||||||||||||||||||||  |||| || ||| |||||||||||| | |||||||||    
T  4862182 aaggcctagcggcgcagcttgttgcccagttgctttgtattcatgtgtaagtacttcttgatata 4862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 50161622 - 50161686
Alignment:
Q  136 tagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatata 200  Q
    ||||||| ||||||||||||| ||||||||||||  || ||||| ||||| |||||||| |||||    
T  50161622 tagcggcacagcttgttgcccttttgccttctatttatttgtaattaatcattgatatatatata 50161686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 1114057 - 1114114
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||| |||| |||||||||||||| ||| ||||||| || |||||| ||||    
T  1114057 aaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataat 1114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 20259986 - 20260038
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaa 179  Q
    |||||||||||||||||||| |||||||||  ||| ||||||| || ||||||    
T  20259986 aaaaaggtctagcggcgcagtttgttgccccattgtcttctattcaagtgtaa 20260038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 26521407 - 26521340
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    |||||||| ||||||| |||||| ||| ||| ||||||||||| ||||||||||||||||||||||||    
T  26521407 aaaaaggtttagcggcacagctttttgtccgcttgccttctatccatgtgtaagtaatccttgatata 26521340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 3329914 - 3329857
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| |||||| |||| || |||||||||||    
T  3329914 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaat 3329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 31847021 - 31846964
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||    
T  31847021 aaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtgtaagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 50001115 - 50001172
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  50001115 aaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 23605008 - 23604941
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||| ||||| ||||||||    
T  23605008 aaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataatcattgatata 23604941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 39001315 - 39001260
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagta 182  Q
    |||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||    
T  39001315 aaaaaggtctagcggcgcagtttgttgcccgcttgcctcctattcatgtgtaagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 40392743 - 40392813
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaat 197  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| || |||||| ||||  || ||||||||    
T  40392743 aaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataatggtttatataaat 40392813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 30940921 - 30940978
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || |||||| ||||    
T  30940921 aaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaaataat 30940978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 25931974 - 25932041
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    |||||| ||||||||| || ||||||| ||||||||||| ||| ||||| |||||||| |||||||||    
T  25931974 aaaaagatctagcggcacaacttgttgtccgtttgccttttattcatgtataagtaattcttgatata 25932041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 4419175 - 4419125
Alignment:
Q  134 tctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||||||| |||||| |||| |||||| |||||||    
T  4419175 tctagcggcgcagcttgttgcccgcttgcctcctattcatgtgcaagtaat 4419125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 53619504 - 53619447
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||||||||||||   || ||| |||| ||||||||||||||    
T  53619504 aaaaaggtctagcggcgcagcttgttgcctacttacctcctattcatgtgtaagtaat 53619447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 12053385 - 12053318
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||| | |||| |||||||||||| | | ||||||||||| |||||||||||||  |||||||||    
T  12053385 aaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaagtaagtcttgatata 12053318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 132303 - 132246
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||| || ||| |||||||||| |||| ||||||||||| |||| |||||||||    
T  132303 aaaaaggtataacggtgcagcttgttccccgcttgccttctattcatgcgtaagtaat 132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 5242 - 5168
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||||||||||||||||||||||| |||| |||||| || |||||| ||||  || ||||||||||||    
T  5242 aaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataatggtttatataaatatat 5168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 38766242 - 38766185
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  38766242 aaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 38766185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 38832220 - 38832163
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||    
T  38832220 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaat 38832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 2520918 - 2520977
Alignment:
Q  135 ctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||| ||||| ||||||||    
T  2520918 ctagcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaatctttgatata 2520977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 25187120 - 25187177
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||| |||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  25187120 aaaaagatctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 25187177  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 45003086 - 45003143
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||| ||||||||||||||    
T  45003086 aaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaat 45003143  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 19277209 - 19277135
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||||||||||||||| |||||||  |||||||||| ||  ||||| ||||  || ||||||||||||    
T  19277209 aaaaaggtctagcggcgcagcttattgcccgcctgccttctattcaaatgtaaataatggtttatataaatatat 19277135  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 28517476 - 28517533
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||| |||||||| | ||||||||||||||| ||||| |||| ||||||||||||||    
T  28517476 aaaaaagtctagcgacacagcttgttgcccgtctgcctcctattcatgtgtaagtaat 28517533  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 45614032 - 45614073
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctat 169  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  45614032 aaaaggtctagcggcgcagcttgttgtccgcttgccttctat 45614073  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 982867 - 982825
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctat 169  Q
    |||||||||||||| | |||||||||||| |||||||||||||    
T  982867 aaaaaggtctagcgacacagcttgttgcctgtttgccttctat 982825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 21327027 - 21327101
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||||||||| ||||||||||||||| | | ||||||||||| || |||||| ||||  || ||||| ||||||    
T  21327027 aaaaaggtctaacggcgcagcttgttgtctgcttgccttctattcaagtgtaaataatggtttatatatatatat 21327101  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 45974788 - 45974862
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    |||||||||||| |||||||||||||| ||| ||| ||||||| || |||||| ||||  || |||||| |||||    
T  45974788 aaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattcaagtgtaaataatggtttatataattatat 45974862  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 40726684 - 40726725
Alignment:
Q  142 cgcagcttgttgcccgtttgccttctatgcatgtgtaagtaa 183  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  40726684 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 36931892 - 36931948
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||| ||||||||||||||||||||  ||| |||||| |||| ||| ||||||||||    
T  36931892 aaaaagtctagcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaat 36931948  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 17249494 - 17249551
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||    
T  17249494 aaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 17249551  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 33220901 - 33220957
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||    
T  33220901 aaaaggtctagcggcgcagcttgttggccgcttgcctcctattcatgtgtaagtaat 33220957  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 7749398 - 7749342
Alignment:
Q  128 aaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||| ||||||||||||||| |||||| |||| ||||||||| ||||    
T  7749398 aaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaat 7749342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 34168839 - 34168772
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||| || |||||    
T  34168839 aaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaattaatcatttatata 34168772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 948020 - 947956
Alignment:
Q  126 aaaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttga 190  Q
    |||||||| ||||||||||||||||| | ||| ||||||| ||| ||||||||| ||||| ||||    
T  948020 aaaaaaggcctagcggcgcagcttgtagaccgcttgccttatattcatgtgtaattaatcattga 947956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 45816 - 45867
Alignment:
Q  133 gtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||||| |||||| |||| || |||||| ||||    
T  45816 gtctagcggcgcagcttgttgcccgcttgcctcctattcaagtgtaaataat 45867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 28625849 - 28625807
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctat 169  Q
    |||||| |||||||||||||||| || ||||||||||||||||    
T  28625849 aaaaagatctagcggcgcagcttattacccgtttgccttctat 28625807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 28009176 - 28009228
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaa 179  Q
    ||||||| ||| || |||||||| ||| ||||||||||||||| |||||||||    
T  28009176 aaaaaggcctaacgacgcagcttattgtccgtttgccttctattcatgtgtaa 28009228  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 103024 - 102949
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatatt 202  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| || |||||| ||||  || ||||| |||||||    
T  103024 aaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataatggtttatatatatatatt 102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 33692241 - 33692298
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||| |||||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  33692241 aaaaagatctagcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaat 33692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 2917550 - 2917607
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||||||| |||||||| | |||||| |||| |||||||| |||||    
T  2917550 aaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaat 2917607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 13167099 - 13167156
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||| |||||||||||||||||||||||  |||||| |||| ||||||||| ||||    
T  13167099 aaaaagatctagcggcgcagcttgttgcccacttgcctcctattcatgtgtaattaat 13167156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 27913540 - 27913491
Alignment:
Q  135 ctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  27913540 ctagcggcgcagcttgttgcccgcttgccttctatccttgtgtaaataat 27913491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 24113493 - 24113426
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatata 194  Q
    |||||||| ||| ||| || |||||||| |||||||||||||| ||| ||||| | ||||||||||||    
T  24113493 aaaaaggtttagtggcacaacttgttgctcgtttgccttctattcatatgtaatttatccttgatata 24113426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 35310351 - 35310309
Alignment:
Q  142 cgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    |||||||||||||||| |||||| |||| ||||||||||||||    
T  35310351 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 35310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 42921616 - 42921542
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    |||||| ||||||||||||||||||| |||  ||||||||||| || |||||| ||||  || ||||| ||||||    
T  42921616 aaaaagatctagcggcgcagcttgtttcccacttgccttctattcaagtgtaaataatgatttatatatatatat 42921542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 25663221 - 25663278
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaat 184  Q
    ||||||||||| || ||||||||||||| ||||||||| || |  |||||||||||||    
T  25663221 aaaaaggtctaacgacgcagcttgttgctcgtttgcctcctttttatgtgtaagtaat 25663278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 6806 - 6754
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaa 179  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||||||    
T  6806 aaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 47709 - 47783
Alignment:
Q  127 aaaaaggtctagcggcgcagcttgttgcccgtttgccttctatgcatgtgtaagtaatccttgatataaatatat 201  Q
    ||||| || ||||||| || ||||||| ||||||| ||||||| || ||||||||||| ||||||||| ||||||    
T  47709 aaaaatgtttagcggcacaacttgttgtccgtttgtcttctattcacgtgtaagtaattcttgatatatatatat 47783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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