View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_4 (Length: 466)
Name: NF1950_low_4
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47973016 - 47973184
Alignment:
| Q |
1 |
agtggaattcagtacgtctgatttttatggaacatttggtaaaaggaagagcgattccatgcaaaaccgtgaaatggaataataatgtccagtctaaaac |
100 |
Q |
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| T |
47973016 |
agtggaattcagtacgtctgatttttatggaacatttggtaaaaggaagggcgattccatgcaaaacagtgaaatggaataataatgtccagtctaaaac |
47973115 |
T |
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| Q |
101 |
ttggcagtttcaataatggggtggcaatatggcattcaattatttggtacatggaatgaatacagaatg |
169 |
Q |
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| T |
47973116 |
ttggcagtttcaataatggggtggcaatatggcattcaattatttggtacatggaatgaatacagaatg |
47973184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 451
Target Start/End: Original strand, 22230569 - 22230698
Alignment:
| Q |
321 |
ctagggggtgtcaaatttcacactcattcaggtctaatgacattttcagtaatggtgatcccatggaaaacactttaaaccaccgggattataagtttct |
420 |
Q |
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| T |
22230569 |
ctagggggtgtcaaacttcgcacacattcaggtctaatgacattttctgtcaaggtgatcccatggcaaacactttgaatcgccgggattataagttgct |
22230668 |
T |
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| Q |
421 |
aaacaactcttaaaagtttctgtcaagtttt |
451 |
Q |
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| T |
22230669 |
gaatgactctt-aaagtttctgtcaaatttt |
22230698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 40849763 - 40849719
Alignment:
| Q |
177 |
tttggttattttcagtttggttcaagtgcagttcacggtttggtt |
221 |
Q |
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| T |
40849763 |
tttggttattttcagtttggttcaagtgcagttcatagtttggtt |
40849719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12485531 - 12485567
Alignment:
| Q |
181 |
gttattttcagtttggttcaagtgcagttcacggttt |
217 |
Q |
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| T |
12485531 |
gttattttcagtttggttcaagtgcagattacggttt |
12485567 |
T |
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