View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_6 (Length: 434)
Name: NF1950_low_6
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 37434745 - 37434363
Alignment:
| Q |
16 |
caaaaagaagtaaaaattcttgatatccacagtcaaatgcttataaaaagaaatccaagcagtacactgaaacacatcatagtcctattgtttaacagaa |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37434745 |
caaaaaaaagtaaaaattcttgatatccacagtcaaatgcttataaaaagaaatccaagcagtacactgaaacatatcatagtcctattgtttaacagaa |
37434646 |
T |
|
| Q |
116 |
agctccctccgcttgtatcaaaggctatccaaggcatccat----gtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttc |
211 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37434645 |
agctccctccgcttgtaacaaaggctatccaaggcatccatccatgtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttc |
37434546 |
T |
|
| Q |
212 |
cctccatacctataaacctatcaggatcattgaaaatatgaggtaacctgtttgcaaatgcaagggatgtagcaactctatatgacccttgggaattcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37434545 |
cctccatacctataaacctatcaggatcattgaaaatatgaggtaacctgtttgcaaatgcaagggatgtagcaactctatatgacccttgggaattcca |
37434446 |
T |
|
| Q |
312 |
tactttttcccttctcttgttgtgacgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37434445 |
tactttttcccttctcttgttgtgacgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcag |
37434363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 135 - 427
Target Start/End: Complemental strand, 580897 - 580589
Alignment:
| Q |
135 |
aaaggctatccaaggcatccatgtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttccctcc-------atacctataa- |
226 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||| | |
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| T |
580897 |
aaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacctatcag |
580798 |
T |
|
| Q |
227 |
------acctatcaggatcattgaaaatatgaggtaacctgtttgcaaatgcaagggatgtagcaactctatatgacccttgggaattccatactttttc |
320 |
Q |
| |
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|| ||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
580797 |
gatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaact--atatgacccttgggaatgtcatactctttc |
580700 |
T |
|
| Q |
321 |
ccttctcttgttgtgacgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcagggc----ttgatgcacctatgcaaga |
416 |
Q |
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|| ||||||||||||||||||||||| | ||||||| |||||||| |||||| | ||||||||||||||||||||| || |||||||||| ||||| |
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| T |
580699 |
ccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatacaaga |
580600 |
T |
|
| Q |
417 |
cattcatctca |
427 |
Q |
| |
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||| ||||||| |
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|
| T |
580599 |
catccatctca |
580589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 135 - 427
Target Start/End: Original strand, 591530 - 591838
Alignment:
| Q |
135 |
aaaggctatccaaggcatccatgtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttccctcc-------atacctataa- |
226 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||| | |
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| T |
591530 |
aaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacctatcag |
591629 |
T |
|
| Q |
227 |
------acctatcaggatcattgaaaatatgaggtaacctgtttgcaaatgcaagggatgtagcaactctatatgacccttgggaattccatactttttc |
320 |
Q |
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|| ||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
591630 |
gatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaact--atatgacccttgggaatgtcatactctttc |
591727 |
T |
|
| Q |
321 |
ccttctcttgttgtgacgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcagggc----ttgatgcacctatgcaaga |
416 |
Q |
| |
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|| ||||||||||||||||||||||| | ||||||| |||||||| |||||| | ||||||||||||||||||||| || |||||||||| ||||| |
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| T |
591728 |
ccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatacaaga |
591827 |
T |
|
| Q |
417 |
cattcatctca |
427 |
Q |
| |
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||| ||||||| |
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| T |
591828 |
catccatctca |
591838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 581100 - 581026
Alignment:
| Q |
60 |
aaaaagaaatccaagcagtacactgaaacacatcatagtcctattgtttaacagaaagctccctccgcttgtatc |
134 |
Q |
| |
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||||||||||||||||||||||||| | || ||||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
581100 |
aaaaagaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatc |
581026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 591327 - 591401
Alignment:
| Q |
60 |
aaaaagaaatccaagcagtacactgaaacacatcatagtcctattgtttaacagaaagctccctccgcttgtatc |
134 |
Q |
| |
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||||||||||||||||||||||||| | || ||||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
591327 |
aaaaagaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatc |
591401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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