View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_7 (Length: 419)
Name: NF1950_low_7
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 41757632 - 41757240
Alignment:
| Q |
17 |
acaattctatagaaagaaaatgtgaggtgaattcgctaggcatggttggcgaaaacacattgcttctggaagaagttacacaaagaagatggatttggat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757632 |
acaattctatagaaagaaaatgtgaggtgaattcgctaggcatggttggcgaaaacacattgcttctggaagaagttacacaaagaagatggatttggat |
41757533 |
T |
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| Q |
117 |
atgaagcaatagctggatgttcccaccctgagcccgacgtcgaagatgaactcctactaccctcatctctataattgctattctctgatttaagagcttg |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757532 |
atgaagcaattgctggatgttcccaccctgagcccgacgtcaaagatgaactcctactaccctcatctctataattgctattctctgatttaagagcttg |
41757433 |
T |
|
| Q |
217 |
aaatgtaatgtctgcatagattaatggttttggagatagaatgagtggtgataacaatggaatagcctttgaagaatcaccaaaagggttagagggacga |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757432 |
aaatgtaatgtctgcatagattaatggctttggagatagaatgagtggtgataacaatggaatagcctttgaagaatcaccaaaagggttagagggacga |
41757333 |
T |
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| Q |
317 |
tcattgtgaaccgtatcaatgtcaagagaggttggtgcatgcctttgtagccttgtagggggtctattcctctttaccaataaatcacctttg |
409 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757332 |
tcatcgtgaaccttatcaatgtcaagagaggttggtgcatgcctttgtagccttgtagggggtctattcctctttaccaataaatcacctttg |
41757240 |
T |
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