View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_8 (Length: 412)
Name: NF1950_low_8
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 34083201 - 34082822
Alignment:
| Q |
18 |
ctcctttcatggcattgtgaatttagttgggtgatctgtatattagttttataggtttgtctttgaattgatttctatcttctattgctttgttttgtcc |
117 |
Q |
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| T |
34083201 |
ctcctttcatggcattgtgaatttagttgggt-agatgtatattagttttataggtttgtctttgaattgatttctatcttctattgctttgttt-gtcc |
34083104 |
T |
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| Q |
118 |
gatgtaagggacatgggttagttcacttgtaaatgttagttgctgagatatcaagctaaacatccgaacttaatgtttctcttttagctaactgagtgag |
217 |
Q |
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| T |
34083103 |
gatgtaagggacatgggtaagttcacttgtaaatgttagttgc-gagaaatcaagctaaacatccgaacttaatgtttctcttttagctaaccgagtgag |
34083005 |
T |
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| Q |
218 |
acatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagggtggtaggttaaggtttaattaaaataaaagcactt |
317 |
Q |
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| T |
34083004 |
atatcagaggtaagagactagagatgatatcaggttatatgcgagacattgagatctatgaaggatggtaggttaaaatttaattaaaataaaagcagtt |
34082905 |
T |
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| Q |
318 |
tagggtcgatcaaggcaagacattagttagtaaattaaccaatgaaacttaatcccaacacaatttgtatattgtttgtttca |
400 |
Q |
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| T |
34082904 |
tagggtcgatcaaggcaagacattagttagtaaattaactgatgaaacttaatcccaacacaatttgtatattgtttgtttca |
34082822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 18435724 - 18435663
Alignment:
| Q |
183 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatga |
244 |
Q |
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| T |
18435724 |
gaacttaatgtttcacttttagctaactgagtgaaacatcagattttagagacaagagatga |
18435663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 400
Target Start/End: Original strand, 26744345 - 26744557
Alignment:
| Q |
184 |
aacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagggt |
283 |
Q |
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|||| |||| |||||| ||||||||||||| ||||||||||| | ||| ||||||||| |||||| ||||| || ||||||| |||||||||||||||| |
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| T |
26744345 |
aactaaatgcttctctattagctaactgagcaagacatcaaaggttagatactagagattatctcccattatttgtgagacatcgagatctatgaagggt |
26744444 |
T |
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| Q |
284 |
ggtaggttaaggtttaattaaaataaaagcactttagggtcgatcaaggcaagacattagttagtaaattaaccaatgaaacttaatcccaacacaattt |
383 |
Q |
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| T |
26744445 |
gataggtgaagatataattgggataataagagtttttagtccattaaagaaagaca----ttagtaaactaactaatgaagcttaatcctaacacaaatt |
26744540 |
T |
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| Q |
384 |
gtatattgtttgtttca |
400 |
Q |
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||| ||||||||||||| |
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| T |
26744541 |
gtaaattgtttgtttca |
26744557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 16573184 - 16573240
Alignment:
| Q |
344 |
ttagtaaattaaccaatgaaacttaatcccaacacaatttgtatattgtttgtttca |
400 |
Q |
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| T |
16573184 |
ttagtgaactaactaatgaaacttaattccaacacattttgtatatcgtgtgtttca |
16573240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 7480408 - 7480506
Alignment:
| Q |
183 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagg |
281 |
Q |
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| T |
7480408 |
gaacttaatgcttatcttttagcttcctaggcgagacatcgaaggttggagactagagatgatttccaattatctgcgagacattgagatctatgaagg |
7480506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 31930612 - 31930738
Alignment:
| Q |
183 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaaggg |
282 |
Q |
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|||||||||| |||||||| ||||||||| | |||||||| | | |||||||||||| |||||| ||||| | ||||||| ||||||||| | || |
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| T |
31930612 |
gaacttaatgcttctctttcagctaactgggcaagacatcataagttagagactagagacgatctctcattatctatgagacatcgagatctatttaagg |
31930711 |
T |
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| Q |
283 |
tggtaggttaaggtttaattaaaataa |
309 |
Q |
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|| || || ||||| ||||| |||||| |
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| T |
31930712 |
tgataagtgaaggtataattgaaataa |
31930738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 23720254 - 23720209
Alignment:
| Q |
188 |
taatgtttctcttttagctaactgagtgagacatcaaagataagag |
233 |
Q |
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||||| || |||||||||||| |||| ||||||||||||||||||| |
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| T |
23720254 |
taatgcttatcttttagctaattgagcgagacatcaaagataagag |
23720209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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