View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1950_low_9 (Length: 395)
Name: NF1950_low_9
Description: NF1950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1950_low_9 |
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| [»] scaffold0287 (2 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 16566 - 16683
Alignment:
| Q |
78 |
cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt |
177 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16566 |
cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt |
16664 |
T |
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| Q |
178 |
gcacaatcatacaaaagac |
196 |
Q |
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||||||||||||||||||| |
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| T |
16665 |
gcacaatcatacaaaagac |
16683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 385
Target Start/End: Original strand, 16745 - 16873
Alignment:
| Q |
257 |
attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc |
356 |
Q |
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|||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||| |
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| T |
16745 |
attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt |
16844 |
T |
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| Q |
357 |
cctttcctgtaacacatcacatgcctttg |
385 |
Q |
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| T |
16845 |
ccttccccgtaacacatcacatgcctttg |
16873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 3629519 - 3629402
Alignment:
| Q |
78 |
cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt |
177 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3629519 |
cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt |
3629421 |
T |
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| Q |
178 |
gcacaatcatacaaaagac |
196 |
Q |
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||||||||||||||||||| |
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| T |
3629420 |
gcacaatcatacaaaagac |
3629402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 385
Target Start/End: Complemental strand, 3629340 - 3629212
Alignment:
| Q |
257 |
attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc |
356 |
Q |
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|||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||| |
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| T |
3629340 |
attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt |
3629241 |
T |
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| Q |
357 |
cctttcctgtaacacatcacatgcctttg |
385 |
Q |
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|||| || ||||||||||||||||||||| |
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| T |
3629240 |
ccttccccgtaacacatcacatgcctttg |
3629212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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