View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_high_10 (Length: 485)

Name: NF19510_high_10
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_high_10
NF19510_high_10
[»] chr6 (10 HSPs)
chr6 (7-465)||(2828638-2829095)
chr6 (7-360)||(2842100-2842453)
chr6 (6-314)||(2833166-2833474)
chr6 (18-326)||(14577872-14578180)
chr6 (16-327)||(2860485-2860796)
chr6 (15-326)||(2865863-2866174)
chr6 (16-352)||(2909900-2910236)
chr6 (16-327)||(2885054-2885365)
chr6 (391-458)||(2860842-2860909)
chr6 (391-458)||(2885411-2885478)
[»] chr7 (1 HSPs)
chr7 (19-218)||(1800810-1801009)
[»] chr4 (2 HSPs)
chr4 (10-215)||(44396056-44396261)
chr4 (139-216)||(53395497-53395574)
[»] chr1 (1 HSPs)
chr1 (19-216)||(6971142-6971339)
[»] chr5 (1 HSPs)
chr5 (164-227)||(8043817-8043880)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 2829095 - 2828638
Alignment:
Q  7 gtgagatgaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttg 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2829095 gtgagatcaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagtcttttcaactcattgttattcttgatagttg 2828996  T
Q  107 ttaactcaagatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  2828995 ttaactcaagatcatacacatcataattcatgaaattagcaatagctgatatcatcgtagattttccagttccaggaggaccaaaaagtagataaccacg 2828896  T
Q  207 tttccaagccttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagg 306  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828895 tttccaagccttcccgactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagg 2828796  T
Q  307 gtttcaaacgttgcggggtgttcggaggttgtttggctccactttgtgcttctagtcctagaactccaccaatcctagctagggttgttggtataaagct 406  Q
    | ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2828795 g-ttcaaacgtcgcggggtgtttgaaggttgtttggctccactttgtgcttctagtcctagaactccaccaatcgtagctagggttgttggtataaagct 2828697  T
Q  407 taagcttcctattcttcaatgtaatagcccttccttgttctaacacatgttggatataa 465  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2828696 taagcttcctattcttcaatgtaatagcctttccttgttctaacacatgttggatataa 2828638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 2842453 - 2842100
Alignment:
Q  7 gtgagatgaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttg 106  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| | |||    
T  2842453 gtgagatcgagagaacaatcaatatcttcaataacaataatcgatttactcgacgtctcaatcaaaagtcttttcaactcattgttatccttgacaattg 2842354  T
Q  107 ttaactcaagatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacg 206  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || |||||||||| |||| ||||||||||||||||    
T  2842353 ttaattcaagatcatacacatcatagttcatgaaattagcaatagccgatatcatggtagatttaccggttcctggaggaccaaaaagtagataaccacg 2842254  T
Q  207 tttccaagccttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagg 306  Q
    ||||||||| || |||||||||| ||| |||||||| ||| | ||||| |||||||||||||||| ||| ||||||||||| ||||| |||| ||| ||     
T  2842253 tttccaagcttttccaactttagcataatactctttccctttcttgaatttaacaagatcatttagaatctcttctttcttttttggttccaaagcaagt 2842154  T
Q  307 gtttcaaacgttgcggggtgttcggaggttgtttggctccactttgtgcttcta 360  Q
    ||||||||  |||| ||||| ||  | ||||| || ||||||||||||||||||    
T  2842153 gtttcaaaacttgccgggtgctcaaaagttgtgtgactccactttgtgcttcta 2842100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 2833166 - 2833474
Alignment:
Q  6 agtgagatgaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagtt 105  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||| || |||||||||||||||| ||| | ||||    
T  2833166 agtgagatcgagagaacaatcaatatcttcgataactataatcgatttacttgacgtttcaatcaaaagtctcttcaactcattgttatccttaacagtt 2833265  T
Q  106 gttaactcaagatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccac 205  Q
    ||||| |||||||||||||||||||| |||||| |||| || || || || ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  2833266 gttaattcaagatcatacacatcatagttcatgtaatttgctatagctgatatcatagtagattttccagttcctggaggaccataaagtagataaccac 2833365  T
Q  206 gtttccaagccttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctag 305  Q
    ||||||||||||| |||||||||| ||| |||||||||||| | |||||||||| ||||||||||| ||| |||| |||||| | ||| |||||||||||    
T  2833366 gtttccaagcctttccaactttagcataatactctttacctttcttgaacttaagaagatcatttaaaatctcttgtttcttttctggttccatagctag 2833465  T
Q  306 ggtttcaaa 314  Q
    |||| ||||    
T  2833466 ggttccaaa 2833474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 14578180 - 14577872
Alignment:
Q  18 agaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaaga 117  Q
    ||||||||||||||| ||||| |||||||| ||||| || |||||| | |||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  14578180 agaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtcttttcaactcattgttatccttgatagttgttaattcaaga 14578081  T
Q  118 tcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagcct 217  Q
    ||||| || || || ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||| |||  |||||| |||||| |||||||||||||    
T  14578080 tcataaacgtcgtagttcataaaatttgcaatagccgatatcatggtagattttccggttcctggaggaccgaaaagtaaataaccgcgtttccaagcct 14577981  T
Q  218 tcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagggtttcaaacgt 317  Q
    | |||||||||| |||||||||||||||||  ||||||||||||||||| | ||| || ||||||||||| |||| ||||||||| || ||||| ||| |    
T  14577980 ttccaactttagcatagtactctttacctgccttgaacttaacaagatcgtctattatctcttctttcttctttgcatccatagcaagtgtttcgaacct 14577881  T
Q  318 tgcggggtg 326  Q
    ||| |||||    
T  14577880 tgcagggtg 14577872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 2860485 - 2860796
Alignment:
Q  16 agagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaa 115  Q
    |||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||| ||||||||| ||||    
T  2860485 agagaacaatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtctttttaactcattgttatccttgacagttgttaattcaa 2860584  T
Q  116 gatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagc 215  Q
    |||||||||| || || ||||||||||| ||||| || || ||||| |||||||| ||||||||||| | |||||| ||||||||||| |||||||||||    
T  2860585 gatcatacacgtcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagc 2860684  T
Q  216 cttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagggtttcaaac 315  Q
    ||| |||||||||| ||| |||||||| ||| | ||||| ||||||||||| ||||| || ||||||||||| |  || |||||||| || |||||||||    
T  2860685 ctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaac 2860784  T
Q  316 gttgcggggtgt 327  Q
     |||| ||||||    
T  2860785 cttgcagggtgt 2860796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 2865863 - 2866174
Alignment:
Q  15 aagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactca 114  Q
    ||||||||||||||||||||||||||| ||||  ||||| ||||||||||| ||||||||  |||||||||||||||||| ||||| ||||||||| |||    
T  2865863 aagagaacaatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattca 2865962  T
Q  115 agatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaag 214  Q
    |||||||| ||||| || ||||||||||| ||||| || || ||||| |||||||| ||||||||||| | |||||| ||||||||||| ||||||||||    
T  2865963 agatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccgcgtttccaag 2866062  T
Q  215 ccttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagggtttcaaa 314  Q
    |||| |||||||||| ||| |||||||| ||| | ||||| ||||||||||| ||||| || ||||||||||| |  || |||||||| || ||||||||    
T  2866063 cctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaa 2866162  T
Q  315 cgttgcggggtg 326  Q
    | |||| |||||    
T  2866163 ccttgcagggtg 2866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 2909900 - 2910236
Alignment:
Q  16 agagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaa 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| ||||| | ||||||| | ||    
T  2909900 agagaacaatcaatatcgtcaataactataatcgatttactcgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattgaa 2909999  T
Q  116 gatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagc 215  Q
    ||||||| || ||||| ||||||||||| ||||| || || ||||| ||||||||||| |||||||| | |||||||| |||||||||||||||||| ||    
T  2910000 gatcataaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgc 2910099  T
Q  216 cttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagggtttcaaac 315  Q
    ||| |||||||||| ||| |||||||| ||| | ||||| ||||||||||| ||||| || ||||| ||||| |  || |||||||| || |||||||||    
T  2910100 ctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttccttcttctccggttccatagcaagtgtttcaaac 2910199  T
Q  316 gttgcggggtgttcggaggttgtttggctccactttg 352  Q
     |||| ||||| ||  | ||||| || ||||||||||    
T  2910200 cttgcagggtgctcaaaagttgtgtgactccactttg 2910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 2885054 - 2885365
Alignment:
Q  16 agagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaa 115  Q
    |||||||||||||||||||||||||| ||||  ||||| || |||||||| ||||||||  |||||||||||||||||| ||||| ||| ||||| || |    
T  2885054 agagaacaatcaatatcttcaataacgataactgatttgcttgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagtggttaattcta 2885153  T
Q  116 gatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagc 215  Q
    ||||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||||| ||||||||||| | |||||||||||||||||| |||||||||||    
T  2885154 gatcatatacatcgtagttcatgaaatttgcaatagccgatatcatggtagatttcccagttcctggtggaccataaagtagataaccccgtttccaagc 2885253  T
Q  216 cttcccaactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttcttgtttggatccatagctagggtttcaaac 315  Q
    ||| |||||||||| ||| |||||||| ||| | ||||| ||||||||||| ||||| || ||||||||||| |  || |||||||| || |||||||||    
T  2885254 ctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaac 2885353  T
Q  316 gttgcggggtgt 327  Q
     |||| ||||||    
T  2885354 cttgcagggtgt 2885365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 2860842 - 2860909
Alignment:
Q  391 ttgttggtataaagcttaagcttcctattcttcaatgtaatagcccttccttgttctaacacatgttg 458  Q
    |||||||| |||||||| ||   ||||||||| ||| |||||||| |||||||||| |||||||||||    
T  2860842 ttgttggtgtaaagctttagtcgcctattcttaaatataatagcctttccttgttccaacacatgttg 2860909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 2885411 - 2885478
Alignment:
Q  391 ttgttggtataaagcttaagcttcctattcttcaatgtaatagcccttccttgttctaacacatgttg 458  Q
    |||||||| |||||||| ||   ||||||||| ||| |||||||| |||||||||| |||||||||||    
T  2885411 ttgttggtgtaaagctttagtcgcctattcttaaatataatagcctttccttgttccaacacatgttg 2885478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 1801009 - 1800810
Alignment:
Q  19 gaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaagat 118  Q
    ||||||||||||||||||| ||||||||| | |||||| || ||||| || || | | || | |||||  | |||| ||| |  |  ||||| |||||||    
T  1801009 gaacaatcaatatcttcaacaactataatagctttactagaagtctcaattaacaactttcttaactcggtattatccttaaccgcggttaattcaagat 1800910  T
Q  119 catacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagcctt 218  Q
    |||| |||||||| ||||||||||| || || || |  ||||| |||||||| || |||||||||| ||||||||||| |||||| ||||||||||||||    
T  1800909 cataaacatcatagttcatgaaattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagcctt 1800810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 44396261 - 44396056
Alignment:
Q  10 agatgaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgtta 109  Q
    |||| ||| ||||||||||| ||||||||||| ||||| || ||||| |  ||||| ||||||||| |  |||||||| | |||| ||| |  | |||||    
T  44396261 agatcaagtgaacaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtattatccttcactgctgtta 44396162  T
Q  110 actcaagatcatacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgttt 209  Q
    |||| | |||||| |||||||||  ||  |||||||| || || | |||||| || ||||| ||||| ||||||| |||| |||||| |||||| | |||    
T  44396161 actctaaatcataaacatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataacccctttt 44396062  T
Q  210 ccaagc 215  Q
    ||||||    
T  44396061 ccaagc 44396056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 53395574 - 53395497
Alignment:
Q  139 aaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagcc 216  Q
    |||||||| || || | ||||||  ||||||||||||||||||||| ||||||||| |||||||| | ||||||||||    
T  53395574 aaattagccatagcagcaatcatgctagattttccagttcctggaggaccataaagaagataacctcttttccaagcc 53395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 6971339 - 6971142
Alignment:
Q  19 gaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagccttttcaactcattgttattcttgatagttgttaactcaagat 118  Q
    |||||||||||||||||||| || || || || ||||| || ||||| ||||||||| |  |||||||| |||||| ||| | ||  || || |||||||    
T  6971339 gaacaatcaatatcttcaatcacaattatagacttacttgatgtctcaatcaaaagcttcctcaactcagtgttatccttaacagcagtcaattcaagat 6971240  T
Q  119 catacacatcataattcatgaaattagcaatggccgaaatcatcgtagattttccagttcctggagaaccataaagtagataaccacgtttccaagcc 216  Q
    |||| | ||||||    |  ||||| || ||||| | |||||| || || |||||||| ||||||| ||||||||||| |||||| | ||||||||||    
T  6971239 cataaagatcatagcctaacaaatttgccatggcagcaatcattgttgactttccagtccctggaggaccataaagtaaataacctcttttccaagcc 6971142  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 8043880 - 8043817
Alignment:
Q  164 tagattttccagttcctggagaaccataaagtagataaccacgtttccaagccttcccaacttt 227  Q
    ||||||| ||||||||||||| |||||| |  | ||||||||||||||||||| | ||||||||    
T  8043880 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 8043817  T

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