View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_12 (Length: 466)
Name: NF19510_high_12
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 45866070 - 45865632
Alignment:
| Q |
18 |
gaaaatggagagttctttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataatttcttctgttttgag |
117 |
Q |
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| T |
45866070 |
gaaaatggagatctctttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataatttcttctgttttgag |
45865971 |
T |
|
| Q |
118 |
tagttgagaagcgtatacttcgacaaaatatttaagcttacttctatattgaaatcagataatctctggtgtggagtactgtcacaagactatggtagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45865970 |
tagttgagaagcgtatacttcgacaaaatatttaagcttacttctatattgaaatcagataatctctggtgtggagtactgtcacaagactatggtagct |
45865871 |
T |
|
| Q |
218 |
catagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcaacatcatgcgtgatggtcacttac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
45865870 |
catagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcagcaacatgcgtgatggtcacttac |
45865771 |
T |
|
| Q |
318 |
ttaagacaagttgtgggagccctaactatgcagctccagaggtttgtatatctacggattttagatttgaaattgaataagttattatcgttgacatgac |
417 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45865770 |
ttaatacaagttgtggaagccctaactatgcagctccagaggtttgtatatctacggattttagatttgaaattgaataagttattattgttgacatgac |
45865671 |
T |
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| Q |
418 |
attgttcattttgataatttacattttcttcctcctatg |
456 |
Q |
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| T |
45865670 |
attgttcattttgataatttacattttcttcctcctatg |
45865632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 24 - 462
Target Start/End: Complemental strand, 4054819 - 4054390
Alignment:
| Q |
24 |
ggagagttctttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataatttcttctgttttgagtagttg |
123 |
Q |
| |
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|||||| ||||||| ||||| | | ||||||||||| | |||||| | ||||| |||| |||||||||||||||||||| ||| | ||||| || ||| |
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| T |
4054819 |
ggagagctctttgattacattgtagaaaagggtaggctacaagaagatgaagcccgcagtttcttccagcaggtataattactttt-ttttgcatacttg |
4054721 |
T |
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| Q |
124 |
agaagcgtatacttcg-acaaaatatttaagcttacttctatattgaaatcagataatctctggtgtggagtactgtcacaagactatggtagctcatag |
222 |
Q |
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| T |
4054720 |
agaagcttatacttgtcatagagtatttaatctaacttctactttgaatgcagataatatctggtgtggaatactgtcataggaatatggtagttcatag |
4054621 |
T |
|
| Q |
223 |
agacctgaaacctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcaacatcatgcgtgatggtcacttacttaag |
322 |
Q |
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| T |
4054620 |
agacttgaagcctgagaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtgatggccactttcttaag |
4054521 |
T |
|
| Q |
323 |
acaagttgtgggagccctaactatgcagctccagaggtttgtatatctacggattttagatttgaaattgaataagttattatcgttgacatgacattgt |
422 |
Q |
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||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |||| ||||||| |||||||||| ||||| ||| |
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| T |
4054520 |
acaagttgtggaagccctaactatgcagctcccgaggtttgcacgtctacggattttaaattt-taattgaacaagttattatggttga--------tgt |
4054430 |
T |
|
| Q |
423 |
tcattttgataatttacattttcttcctcctatgcttctc |
462 |
Q |
| |
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||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
4054429 |
tcattttgataatctaccttttcttcctcctatgattctc |
4054390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 461
Target Start/End: Original strand, 17404253 - 17404671
Alignment:
| Q |
33 |
tttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataatttcttctgttttgagtagttgagaagcgta |
132 |
Q |
| |
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||||| ||||||| | ||||||||||| | |||||| | |||||||||| |||||||||||||||||||| ||| |||| || | ||||||||| || |
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| T |
17404253 |
tttgattacatagtagaaaagggtaggcttcaagaagatgaagctcgcagtttcttccagcaggtataattacttttgttgtgcgc--ttgagaagctta |
17404350 |
T |
|
| Q |
133 |
tacttcg-acaaaatatttaagcttacttctatattgaaatcagataatctctggtgtggagtactgtcacaagactatggtagctcatagagacctgaa |
231 |
Q |
| |
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||||| ||| |||||||||||| ||||||| ||| | |||| || |||||| |||| |||||||| | || |||||||| ||||||||||||||| |
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| T |
17404351 |
tacttgtcacagaatatttaagctaacttctactttgtatgtagattatttctggtttggattactgtcataggaatatggtagttcatagagacctgaa |
17404450 |
T |
|
| Q |
232 |
acctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcaacatcatgcgtgatggtcacttacttaagacaagttgt |
331 |
Q |
| |
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||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17404451 |
acccgaaaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtgatggtcactttcttaagacaagttgc |
17404550 |
T |
|
| Q |
332 |
gggagccctaactatgcagctccagaggtttgtatatctacggattttagatttgaaattgaataagttattatcgttgacatgacattgttcattttga |
431 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| || | |||||||||| || | |||||||||||| |
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| T |
17404551 |
ggaagccccaactatgcagctccagaggtttgtacatctacagattttaaatttgtaacccagcaagttattattgt---------aatgttcattttga |
17404641 |
T |
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| Q |
432 |
taatttacattttcttcctcctatgcttct |
461 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |
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| T |
17404642 |
taatctacattttcttcctcctatgattct |
17404671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 170 - 366
Target Start/End: Complemental strand, 4046204 - 4046008
Alignment:
| Q |
170 |
aatcagataatctctggtgtggagtactgtcacaagactatggtagctcatagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtca |
269 |
Q |
| |
|
|||||||||||||| || || || | |||||||| | |||||| |||||||||||| | || ||||||| ||||||||||||||||||| | | ||| |
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| T |
4046204 |
aatcagataatctccggggtacagcattgtcacaacaatatggtggctcatagagacttaaagcctgaaactatacttttggactcaaaattcaatatca |
4046105 |
T |
|
| Q |
270 |
aaattgctgattttggcttgagcaacatcatgcgtgatggtcacttacttaagacaagttgtgggagccctaactatgcagctccagaggtttgtat |
366 |
Q |
| |
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| ||| ||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || | ||||||||||||||| ||||||||||| |
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| T |
4046104 |
agattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgaggtttgtat |
4046008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 4125075 - 4125173
Alignment:
| Q |
235 |
tgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcaacatcatgcgtgatggtcacttacttaagacaagttgtgg |
333 |
Q |
| |
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| T |
4125075 |
tgaaactatacttttggactcaaaatttaatgtcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagttgtgg |
4125173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 4105593 - 4105723
Alignment:
| Q |
236 |
gaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcaacatcatgcgtgatggtcacttacttaagac-aagttgtggg |
334 |
Q |
| |
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|||| ||||||||||||||||||| | |||||| ||| || |||||||||| ||||||| |||| ||| || ||||||||||| |||||||| |
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| T |
4105593 |
gaaactatacttttggactcaaaattcaatgtcaagattactaattttggctttagcaacacaatgcagcatgatcggttacttaagacaaagttgtgaa |
4105692 |
T |
|
| Q |
335 |
agccctaactatgcagctccagaggtttgta |
365 |
Q |
| |
|
|| | |||||||||||||| ||||||||||| |
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|
| T |
4105693 |
agtcttaactatgcagctctagaggtttgta |
4105723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 4046373 - 4046305
Alignment:
| Q |
33 |
tttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataa |
101 |
Q |
| |
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||||| ||||||| | |||||||||||||||| ||| | ||||| |||| ||| || |||||||||||| |
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| T |
4046373 |
tttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcaggtataa |
4046305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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